Variant report

Variant	nsv976503
Chromosome Location	chr11:105607801-105610804
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 94 )

Variant overlapped rSNPs/rCNVs (count:120 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs529141258	chr11:105607807-105607808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs541305683	chr11:105607848-105607849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs187233867	chr11:105607849-105607850	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs574924301	chr11:105607932-105607933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs77756983	chr11:105607955-105607956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs563680040	chr11:105607991-105607992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs531027364	chr11:105608034-105608035	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs564878145	chr11:105608081-105608082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs546082957	chr11:105608110-105608111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs192858853	chr11:105608114-105608115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs146543160	chr11:105608133-105608134	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs570468875	chr11:105608169-105608170	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs544454191	chr11:105608184-105608185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs550572397	chr11:105608225-105608226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs560127322	chr11:105608247-105608248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs529701718	chr11:105608258-105608259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs138870747	chr11:105608278-105608279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs529240605	chr11:105608303-105608304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs375210070	chr11:105608349-105608350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs187723554	chr11:105608350-105608351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs193140026	chr11:105608357-105608358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs374606599	chr11:105608376-105608377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs141996155	chr11:105608446-105608447	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs369407551	chr11:105608463-105608464	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs146309142	chr11:105608528-105608529	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs372236678	chr11:105608546-105608547	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs377491277	chr11:105608556-105608557	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs549480579	chr11:105608578-105608579	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs370324859	chr11:105608594-105608595	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs535523255	chr11:105608682-105608683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs184692069	chr11:105608730-105608731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs4453207	chr11:105608742-105608743	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs115897236	chr11:105608743-105608744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs531970487	chr11:105608744-105608745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs552302035	chr11:105608745-105608746	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs189045907	chr11:105608750-105608751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs57867779	chr11:105608755-105608756	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs562084224	chr11:105608783-105608784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs529549250	chr11:105608784-105608785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs547881715	chr11:105608802-105608803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs113330646	chr11:105608808-105608809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs369873324	chr11:105608822-105608823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs563267789	chr11:105608823-105608824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs139476734	chr11:105608864-105608865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs373911618	chr11:105608893-105608894	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs552335904	chr11:105608980-105608981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs79727051	chr11:105609001-105609002	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs11226836	chr11:105609006-105609007	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs368420883	chr11:105609008-105609009	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs570542775	chr11:105609034-105609035	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:94)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Melanoma	17363583	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Obesity	19966786	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17142309	CNVD
Cancer	20164919	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105600200-105609000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:105601800-105609000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:105608400-105608600	Enhancers	Fetal Brain Male	brain
4	chr11:105608600-105609200	Weak transcription	Fetal Brain Male	brain
5	chr11:105609000-105610200	Enhancers	Brain Germinal Matrix	brain
6	chr11:105609000-105610600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:105609000-105611400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:105609200-105610000	Enhancers	Fetal Brain Female	brain
9	chr11:105609200-105610800	Enhancers	Fetal Brain Male	brain
10	chr11:105609800-105610200	Enhancers	Brain Anterior Caudate	brain
11	chr11:105609800-105610200	Enhancers	Brain Substantia Nigra	brain
12	chr11:105609800-105610800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:105610200-105611400	Weak transcription	Brain Substantia Nigra	brain
14	chr11:105610600-105611400	Enhancers	GM12878-XiMat	blood
15	chr11:105610800-105615200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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