Variant report

Variant	nsv976526
Chromosome Location	chr11:23780807-23794569
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-17A1.2.1-2	chr11:23789323-23789362	XLOC_009394
2	lnc-RP11-17A1.2.1-2	chr11:23782876-23783176	ENSG00000254861
3	lnc-RP11-17A1.2.1-2	chr11:23782899-23783176	XLOC_009394

Extended variants
information (count: 616 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:616 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs78108048	chr11:23780862-23780863	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs77849964	chr11:23780968-23780969	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs191006610	chr11:23781016-23781017	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs544095119	chr11:23781041-23781042	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs73439884	chr11:23781063-23781064	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs11027482	chr11:23781087-23781088	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs578098442	chr11:23781090-23781091	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs543470361	chr11:23781091-23781092	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs574643565	chr11:23781094-23781095	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs534035500	chr11:23781118-23781119	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs73439889	chr11:23781174-23781175	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs573005265	chr11:23781200-23781201	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs541634416	chr11:23781204-23781205	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs545072674	chr11:23781238-23781239	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs564952863	chr11:23781240-23781241	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs117214676	chr11:23781253-23781254	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs544277215	chr11:23781254-23781255	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs561665159	chr11:23781265-23781266	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs34252155	chr11:23781288-23781289	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs530289084	chr11:23781294-23781295	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs547172821	chr11:23781295-23781296	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs35425946	chr11:23781299-23781300	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs58173967	chr11:23781329-23781330	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs532258449	chr11:23781346-23781347	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs552333513	chr11:23781347-23781348	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs560240762	chr11:23781379-23781380	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs112404201	chr11:23781414-23781415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs568954982	chr11:23781427-23781428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs536768913	chr11:23781450-23781451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs187448639	chr11:23781452-23781453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs373352032	chr11:23781498-23781499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs537895096	chr11:23781514-23781515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs146017841	chr11:23781529-23781530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs7116643	chr11:23781534-23781535	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs192217739	chr11:23781576-23781577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs75007796	chr11:23781579-23781580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs76878357	chr11:23781623-23781624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs184779338	chr11:23781624-23781625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs539224143	chr11:23781695-23781696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs558671882	chr11:23781699-23781700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs575324679	chr11:23781768-23781769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs544603062	chr11:23781769-23781770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs561078610	chr11:23781783-23781784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs574975182	chr11:23781868-23781869	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs371381690	chr11:23781948-23781949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs372242143	chr11:23781959-23781960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs560749729	chr11:23781981-23781982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs532783577	chr11:23781994-23781995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs187987160	chr11:23782038-23782039	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs115883546	chr11:23782054-23782055	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23772400-23782400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:23780800-23781400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:23781200-23781400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:23781400-23785400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:23781400-23787200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:23782000-23783200	Enhancers	Fetal Lung	lung
7	chr11:23782400-23783200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:23785400-23789000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:23786200-23786400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr11:23787000-23788200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr11:23787200-23788000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:23787200-23788000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:23787200-23788200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr11:23789200-23792000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:23790200-23791200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr11:23790400-23791800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:23792600-23794200	Enhancers	Fetal Stomach	stomach
18	chr11:23792800-23794200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:23794200-23795200	Weak transcription	Fetal Stomach	stomach

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