Variant report

Variant	nsv976644
Chromosome Location	chr12:87563287-87563955
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MGAT4C-4	chr12:87563762-87564206	NONHSAT029769

Extended variants
information (count: 25 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs544988994	chr12:87563300-87563301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs565252780	chr12:87563378-87563379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs146250220	chr12:87563379-87563380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs547870717	chr12:87563410-87563411	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs537677417	chr12:87563423-87563424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs1865153	chr12:87563518-87563519	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs374611362	chr12:87563520-87563521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs551767116	chr12:87563528-87563529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs550424099	chr12:87563576-87563577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs570238800	chr12:87563623-87563624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs539285920	chr12:87563758-87563759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs139588872	chr12:87563763-87563764	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs1409596	chr12:87563777-87563778	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs533555889	chr12:87563779-87563780	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs368908566	chr12:87563790-87563791	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs553444117	chr12:87563797-87563798	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs191691388	chr12:87563832-87563833	ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
18	rs1409597	chr12:87563845-87563846	ZNF genes & repeats Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs35256701	chr12:87563850-87563851	ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs145660683	chr12:87563851-87563852	ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
21	rs183140807	chr12:87563866-87563867	ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
22	rs576177479	chr12:87563895-87563896	ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
23	rs545239822	chr12:87563926-87563927	ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
24	rs565039788	chr12:87563937-87563938	ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
25	rs572132326	chr12:87563939-87563940	ZNF genes & repeats Enhancers	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17899364	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	21390271	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	22032731	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Ovarian cancer	21720365	CNVD
Acute myeloid leukemia	20729466	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Renal cell carcinoma	18194544	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	21364760	CNVD
Multiple myeloma	17550852	CNVD
Melanoma	17363583	CNVD
Urothelial cell carcinoma	18451213	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute lymphoblastic leukemia	17443227	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87560000-87563800	Weak transcription	Aorta	Aorta
2	chr12:87563800-87564000	ZNF genes & repeats	Aorta	Aorta
3	chr12:87563800-87564000	Enhancers	Pancreas	Pancrea

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