Variant report

Variant	nsv976735
Chromosome Location	chr12:9274937-9303290
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr12:9275901-9275983	K562	blood:	n/a	n/a
2	ARID3A	chr12:9284068-9285425	HepG2	liver:	n/a	n/a
3	ARID3A	chr12:9274241-9275270	HepG2	liver:	n/a	n/a
4	ARID3A	chr12:9287888-9289159	HepG2	liver:	n/a	n/a
5	ARID3A	chr12:9275966-9276528	HepG2	liver:	n/a	n/a
6	BHLHE40	chr12:9284768-9285070	HepG2	liver:	n/a	n/a
7	BHLHE40	chr12:9274748-9275094	HepG2	liver:	n/a	n/a
8	BHLHE40	chr12:9274743-9275213	HepG2	liver:	n/a	n/a
9	BRCA1	chr12:9275010-9275210	HepG2	liver:	n/a	n/a
10	BRCA1	chr12:9300416-9300530	Hela-S3	cervix:	n/a	n/a
11	BRCA1	chr12:9292484-9293424	Hela-S3	cervix:	n/a	n/a
12	BRCA1	chr12:9297247-9297916	Hela-S3	cervix:	n/a	n/a
13	CBX3	chr12:9287860-9288204	HCT-116	colon:	n/a	n/a
14	CEBPB	chr12:9284670-9285036	A549	lung:	n/a	chr12:9284799-9284810
15	CEBPB	chr12:9284517-9285192	HepG2	liver:	n/a	chr12:9284799-9284810
16	CEBPB	chr12:9284466-9285279	HepG2	liver:	n/a	chr12:9284799-9284810 chr12:9284483-9284491
17	CEBPB	chr12:9296984-9297730	Hela-S3	cervix:	n/a	n/a
18	CEBPB	chr12:9284599-9285123	HepG2	liver:	n/a	chr12:9284799-9284810
19	CEBPB	chr12:9284594-9285211	Hela-S3	cervix:	n/a	chr12:9284799-9284810
20	CEBPB	chr12:9274732-9275174	HepG2	liver:	n/a	n/a
21	CEBPB	chr12:9274742-9275093	HepG2	liver:	n/a	n/a
22	CEBPB	chr12:9284555-9285223	HepG2	liver:	n/a	chr12:9284799-9284810
23	CEBPB	chr12:9284618-9285214	MCF-7	breast:	n/a	chr12:9284799-9284810
24	CEBPB	chr12:9275982-9276655	Hela-S3	cervix:	n/a	n/a
25	CEBPB	chr12:9274709-9275022	HepG2	liver:	n/a	n/a
26	CEBPB	chr12:9279010-9279015	H1-hESC	embryonic stem cell:	n/a	n/a
27	CEBPB	chr12:9274654-9275169	HepG2	liver:	n/a	n/a
28	CEBPB	chr12:9284560-9285227	MCF-7	breast:	n/a	chr12:9284799-9284810
29	CEBPB	chr12:9292444-9293414	Hela-S3	cervix:	n/a	n/a
30	CEBPB	chr12:9285768-9286913	Hela-S3	cervix:	n/a	n/a
31	CEBPD	chr12:9284600-9285098	HepG2	liver:	n/a	n/a
32	CHD2	chr12:9292486-9292962	Hela-S3	cervix:	n/a	n/a
33	CHD2	chr12:9299545-9299646	Hela-S3	cervix:	n/a	n/a
34	CREB1	chr12:9274621-9275305	HepG2	liver:	n/a	n/a
35	CREB1	chr12:9274612-9275340	HepG2	liver:	n/a	n/a
36	CREB1	chr12:9288397-9288927	HepG2	liver:	n/a	n/a
37	CTCF	chr12:9287980-9288130	K562	blood:	n/a	chr12:9288062-9288071 chr12:9288061-9288082 chr12:9288059-9288077 chr12:9288059-9288072
38	CTCF	chr12:9287980-9288130	HRPEpiC	eye:	n/a	chr12:9288062-9288071 chr12:9288061-9288082 chr12:9288059-9288077 chr12:9288059-9288072
39	CTCF	chr12:9287940-9288090	HCT-116	colon:	n/a	chr12:9288062-9288071 chr12:9288061-9288082 chr12:9288059-9288077 chr12:9288059-9288072
40	CTCF	chr12:9287960-9288110	GM12872	blood:	n/a	chr12:9288062-9288071 chr12:9288061-9288082 chr12:9288059-9288077 chr12:9288059-9288072
41	CTCF	chr12:9287952-9288165	GM19239	blood:	n/a	chr12:9288062-9288071 chr12:9288061-9288082 chr12:9288059-9288077 chr12:9288059-9288072
42	CTCF	chr12:9288060-9288210	HRE	kidney:	n/a	chr12:9288062-9288071 chr12:9288061-9288082
43	CTCF	chr12:9287940-9288090	HVMF	connective:	n/a	chr12:9288062-9288071 chr12:9288061-9288082 chr12:9288059-9288077 chr12:9288059-9288072
44	CTCF	chr12:9287980-9288130	AG04450	lung:	n/a	chr12:9288062-9288071 chr12:9288061-9288082 chr12:9288059-9288077 chr12:9288059-9288072
45	CTCF	chr12:9302126-9302236	GM13977	blood:	n/a	n/a
46	CTCF	chr12:9302000-9302150	GM12866	blood:	n/a	chr12:9302122-9302130
47	CTCF	chr12:9288020-9288170	GM12873	blood:	n/a	chr12:9288062-9288071 chr12:9288061-9288082 chr12:9288059-9288077 chr12:9288059-9288072
48	CTCF	chr12:9287956-9288162	GM13977	blood:	n/a	chr12:9288062-9288071 chr12:9288061-9288082 chr12:9288059-9288077 chr12:9288059-9288072
49	CTCF	chr12:9302140-9302290	NHEK	skin:	n/a	n/a
50	CTCF	chr12:9287980-9288130	GM12878	blood:	n/a	chr12:9288062-9288071 chr12:9288061-9288082 chr12:9288059-9288077 chr12:9288059-9288072

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:9280923-9280973	AG09319	gingival:	n/a
2	chr12:9280923-9280973	AG09319	gingival:	n/a
3	chr12:9280567-9280617	NHDF-neo	bronchial:	n/a
4	chr12:9280420-9280470	NH-A	brain:	n/a
5	chr12:9287358-9287408	Hepatocyte	liver:	n/a
6	chr12:9287358-9287408	MCF10A-Er-Src	breast:	n/a
7	chr12:9287358-9287408	HL-60	blood:	n/a
8	chr12:9280567-9280617	HUVEC	blood vessel:	n/a
9	chr12:9280420-9280470	LNCaP	prostate:	n/a
10	chr12:9280923-9280973	HRE	kidney:	n/a
11	chr12:9280923-9280973	MCF10A-Er-Src	breast:	n/a
12	chr12:9280420-9280470	HEK293	kidney:	embryo
13	chr12:9280420-9280470	NHDF-neo	bronchial:	n/a
14	chr12:9287358-9287408	Jurkat	blood:	n/a
15	chr12:9280923-9280973	PFSK-1	brain:	n/a
16	chr12:9287358-9287408	AG09319	gingival:	n/a
17	chr12:9280420-9280470	GM06990	blood:	n/a
18	chr12:9287358-9287408	NHDF-neo	bronchial:	n/a
19	chr12:9287358-9287408	AoSMC	blood vessel:	n/a
20	chr12:9287358-9287408	ProgFib	skin:	n/a
21	chr12:9280567-9280617	AG10803	skin:	n/a
22	chr12:9280567-9280617	SKMC	muscle:	n/a
23	chr12:9280420-9280470	T-47D	breast:	n/a
24	chr12:9287358-9287408	HIPEpiC	eye:	n/a
25	chr12:9277178-9277228	AG04450	lung:	fetal
26	chr12:9280923-9280973	HAEpiC	amniotic membrane:	n/a
27	chr12:9277178-9277228	HEEpiC	esophagus:	n/a
28	chr12:9277178-9277228	HRPEpiC	eye:	n/a
29	chr12:9287358-9287408	LNCaP	prostate:	n/a
30	chr12:9280420-9280470	HNPCEpiC	eye:	n/a
31	chr12:9287358-9287408	HCF	heart:	n/a
32	chr12:9280567-9280617	H1-hESC	embryonic stem cell:	embryo
33	chr12:9287358-9287408	AG09309	skin:	n/a
34	chr12:9277178-9277228	HIPEpiC	eye:	n/a
35	chr12:9280923-9280973	SK-N-SH_RA	brain:	n/a
36	chr12:9280420-9280470	Jurkat	blood:	n/a
37	chr12:9280567-9280617	AG04450	lung:	fetal
38	chr12:9280567-9280617	HPAEpiC	pulmonary alveolar:	n/a
39	chr12:9287358-9287408	HRE	kidney:	n/a
40	chr12:9280923-9280973	NB4	blood:	n/a
41	chr12:9280923-9280973	IMR90	lung:	fetal
42	chr12:9280923-9280973	HRPEpiC	eye:	n/a
43	chr12:9287358-9287408	MCF-7	breast:	n/a
44	chr12:9280420-9280470	Caco-2	colon:	n/a
45	chr12:9287358-9287408	PANC-1	pancreas:	n/a
46	chr12:9280923-9280973	A549	lung:	n/a
47	chr12:9280923-9280973	Hela-S3	cervix:	n/a
48	chr12:9280567-9280617	PFSK-1	brain:	n/a
49	chr12:9280567-9280617	HRCEpiC	kidney:	n/a
50	chr12:9287358-9287408	HNPCEpiC	eye:	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:9284631..9285460-chr12:9432685..9433670,3	MCF-7	breast:
2	chr12:9216885..9219408-chr12:9300483..9302545,2	MCF-7	breast:
3	chr12:9289234..9291527-chr12:9295649..9297561,2	K562	blood:
4	chr12:9284806..9285460-chr12:9433144..9433670,2	MCF-7	breast:
5	chr12:9286914..9287420-chr12:92539193..92539798,2	Hela-S3	cervix:
6	chr12:9265907..9267822-chr12:9274659..9276392,2	MCF-7	breast:
7	chr12:9289234..9291527-chr12:9295649..9297561,2	K562	blood:
8	chr12:9216174..9218577-chr12:9277293..9280144,3	MCF-7	breast:
9	chr12:9216566..9218445-chr12:9283863..9285445,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLRG1-5	chr12:9287680-9288187	NONHSAT026390

Variant related genes	Relation type
ENSG00000211542	TF binding region
ENSG00000256937	TF binding region
ENSG00000256720	TF binding region
ENSG00000211542	CpG island
ENSG00000256937	CpG island
ENSG00000256720	CpG island
ENSG00000245904	chromatin interactions
ENSG00000133639	chromatin interactions
ENSG00000245105	chromatin interactions
ENSG00000214851	chromatin interactions

Extended variants
information (count: 557 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:557 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs555877252	chr12:9275051-9275052	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs186379535	chr12:9275202-9275203	Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs188871955	chr12:9275234-9275235	Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs575713085	chr12:9275256-9275257	Weak transcription Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs181663538	chr12:9275400-9275401	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs536773676	chr12:9275406-9275407	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs79887123	chr12:9275440-9275441	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs34143709	chr12:9275530-9275531	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region	2 gene(s)	Overlapped CNVs	n/a
9	rs397781761	chr12:9275533-9275534	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region	2 gene(s)	Overlapped CNVs	n/a
10	rs78062942	chr12:9275534-9275535	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region	2 gene(s)	Overlapped CNVs	n/a
11	rs186328552	chr12:9275587-9275588	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region	2 gene(s)	Overlapped CNVs	n/a
12	rs569409176	chr12:9275589-9275590	Weak transcription Active TSS Flanking Active TSS Enhancers	TF binding region	2 gene(s)	Overlapped CNVs	n/a
13	rs10842914	chr12:9275778-9275779	Weak transcription Active TSS Enhancers	TF binding region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs191228123	chr12:9275819-9275820	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
15	rs543487697	chr12:9275836-9275837	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
16	rs11611728	chr12:9275852-9275853	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
17	rs34929189	chr12:9275874-9275875	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
18	rs6487609	chr12:9275926-9275927	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs544935798	chr12:9276013-9276014	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
20	rs139523378	chr12:9276063-9276064	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
21	rs73246318	chr12:9276098-9276099	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs112660508	chr12:9276124-9276125	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
23	rs183079125	chr12:9276203-9276204	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
24	rs369894451	chr12:9276326-9276327	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
25	rs185980762	chr12:9276328-9276329	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
26	rs562804386	chr12:9276367-9276368	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
27	rs371259775	chr12:9276368-9276369	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
28	rs375809728	chr12:9276408-9276409	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
29	rs11049011	chr12:9276410-9276411	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
30	rs373106697	chr12:9276441-9276442	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
31	rs35328903	chr12:9276451-9276452	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
32	rs189968409	chr12:9276488-9276489	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
33	rs200069975	chr12:9276574-9276575	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
34	rs79649296	chr12:9276582-9276583	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
35	rs78744476	chr12:9276583-9276584	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
36	rs111331993	chr12:9276591-9276592	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region	2 gene(s)	Overlapped CNVs	n/a
37	rs139014751	chr12:9276770-9276771	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs183322752	chr12:9276780-9276781	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs60189846	chr12:9276828-9276829	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
40	rs397703313	chr12:9276829-9276830	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
41	rs71453673	chr12:9276883-9276884	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
42	rs562767991	chr12:9276885-9276886	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
43	rs574718829	chr12:9277009-9277010	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
44	rs550778704	chr12:9277116-9277117	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
45	rs76096507	chr12:9277150-9277151	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
46	rs142189260	chr12:9277202-9277203	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	CpG island	2 gene(s)	Overlapped CNVs	n/a
47	rs226374	chr12:9277220-9277221	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	CpG island	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
48	rs188058694	chr12:9277314-9277315	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs530227115	chr12:9277328-9277329	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs192147554	chr12:9277345-9277346	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Medulloblastoma	16968546	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Hepatocellular carcinoma	16750200	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Breast cancer	22032731	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	21965145	CNVD
Acute myeloid leukemia	16864856	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Disorders of sex development	21048976	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Prostate cancer	19156837	CNVD
Emphysema	19352772	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Malignant germ cell tumour	17285132	CNVD
Melanoma	18172304	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Breast cancer	21264507	CNVD
Cancer	16751803	CNVD
Testicular cancer	18059402	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Seminomas	18059402	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Testicular germ cell tumor	18059402	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	21858162	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Epilepsy	21858020	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Myelofibrosis	22110671	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
craniofacial dysmorphism	21918468	CNVD
Malignant peripheral nerve sheath tumor	19844265	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Alzheimer''s disease	17160897	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	21251322	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:276 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9262800-9289000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:9269000-9277400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr12:9269000-9280400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr12:9269000-9319200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr12:9269200-9275800	Weak transcription	Brain Angular Gyrus	brain
6	chr12:9269200-9280400	Weak transcription	Primary T cells from cord blood	blood
7	chr12:9269200-9281800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr12:9269400-9276000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr12:9269400-9276400	Weak transcription	Right Ventricle	heart
10	chr12:9269800-9276000	Weak transcription	Brain Anterior Caudate	brain
11	chr12:9270000-9276000	Weak transcription	Fetal Stomach	stomach
12	chr12:9270000-9278800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr12:9270200-9289000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr12:9271000-9276000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr12:9271000-9276200	Weak transcription	Ovary	ovary
16	chr12:9271200-9275800	Weak transcription	Right Atrium	heart
17	chr12:9271200-9276800	Weak transcription	Psoas Muscle	Psoas
18	chr12:9271200-9276800	Weak transcription	Spleen	Spleen
19	chr12:9271600-9276000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr12:9271800-9276200	Weak transcription	HMEC	breast
21	chr12:9271800-9280400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr12:9272000-9275200	Flanking Active TSS	Liver	Liver
23	chr12:9272000-9289000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr12:9272200-9276000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr12:9272200-9280200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr12:9272200-9282400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr12:9272800-9276000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr12:9272800-9276200	Weak transcription	Colon Smooth Muscle	Colon
29	chr12:9273400-9276200	Weak transcription	Adipose Nuclei	Adipose
30	chr12:9273800-9277000	Weak transcription	Left Ventricle	heart
31	chr12:9274000-9276800	Weak transcription	Lung	lung
32	chr12:9274200-9277600	Enhancers	Hela-S3	cervix
33	chr12:9274400-9275000	Enhancers	Fetal Intestine Large	intestine
34	chr12:9274400-9275200	Flanking Active TSS	Fetal Lung	lung
35	chr12:9274600-9275200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr12:9274600-9275400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr12:9274600-9275400	Enhancers	HepG2	liver
38	chr12:9274600-9275800	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr12:9274800-9275000	Flanking Active TSS	Aorta	Aorta
40	chr12:9274800-9275000	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr12:9274800-9275000	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr12:9274800-9275000	Enhancers	Gastric	stomach
43	chr12:9274800-9275000	Enhancers	Small Intestine	intestine
44	chr12:9274800-9275200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr12:9274800-9275200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr12:9274800-9275200	Active TSS	Brain Substantia Nigra	brain
47	chr12:9274800-9275200	Enhancers	Fetal Intestine Small	intestine
48	chr12:9274800-9275200	Enhancers	NHLF	lung
49	chr12:9275000-9275800	Weak transcription	Brain Hippocampus Middle	brain
50	chr12:9275000-9276000	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links