Variant report

Variant	nsv976930
Chromosome Location	chr15:45254291-45263276
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr15:45260122-45260297	GM12878	blood:	n/a	n/a
2	CTCF	chr15:45260095-45260323	HepG2	liver:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
3	CTCF	chr15:45259847-45259966	GM12891	blood:	n/a	n/a
4	CTCF	chr15:45260100-45260336	A549	lung:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
5	CTCF	chr15:45259856-45259875	Gliobla	brain:	n/a	n/a
6	CTCF	chr15:45260063-45260376	HUVEC	blood vessel:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
7	CTCF	chr15:45260196-45260273	GM19239	blood:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
8	CTCF	chr15:45260080-45260354	K562	blood:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
9	CTCF	chr15:45260100-45260316	A549	lung:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
10	CTCF	chr15:45260098-45260348	LNCaP	prostate:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
11	CTCF	chr15:45260201-45260254	A549	lung:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
12	CTCF	chr15:45259856-45259973	GM12892	blood:	n/a	n/a
13	CTCF	chr15:45259882-45259930	Gliobla	brain:	n/a	n/a
14	CTCF	chr15:45259827-45259964	GM19240	blood:	n/a	n/a
15	CTCF	chr15:45260099-45260353	GM10266	blood:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
16	CTCF	chr15:45260093-45260355	LNCaP	prostate:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
17	CTCF	chr15:45260105-45260349	GM13977	blood:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
18	CTCF	chr15:45260090-45260391	Spleen_OC	spleen:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
19	CTCF	chr15:45260102-45260327	GM13976	blood:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
20	CTCF	chr15:45260116-45260313	MCF-7	breast:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
21	CTCF	chr15:45260092-45260439	K562	blood:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
22	CTCF	chr15:45260080-45260338	Hela-S3	cervix:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
23	CTCF	chr15:45260097-45260349	MCF-7	breast:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
24	CTCF	chr15:45260060-45260383	Medullo	brain:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
25	CTCF	chr15:45260058-45260344	A549	lung:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
26	CTCF	chr15:45259851-45259951	GM19238	blood:	n/a	n/a
27	CTCF	chr15:45260094-45260336	Gliobla	brain:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
28	CTCF	chr15:45260104-45260352	Kidney_OC	kidney:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
29	CTCF	chr15:45260093-45260344	GM10248	blood:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
30	CTCF	chr15:45260130-45260304	ProgFib	skin:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
31	CTCF	chr15:45260080-45260344	GM12878	blood:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
32	CTCF	chr15:45260031-45260369	A549	lung:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
33	CTCF	chr15:45260143-45260296	GM20000	blood:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
34	CTCF	chr15:45260203-45260236	MCF-7	breast:	n/a	n/a
35	CTCF	chr15:45260088-45260366	Pancreas_OC	pancreas:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
36	CTCF	chr15:45260116-45260358	Lung_OC	lung:	n/a	chr15:45260225-45260246 chr15:45260224-45260240
37	CTCF	chr15:45259883-45259953	GM19239	blood:	n/a	n/a
38	CTCF	chr15:45259861-45259938	GM13977	blood:	n/a	n/a
39	FOXA1	chr15:45260001-45260439	HepG2	liver:	n/a	n/a
40	FOXM1	chr15:45260066-45260417	GM12878	blood:	n/a	n/a
41	IRF4	chr15:45260080-45260471	GM12878	blood:	n/a	n/a
42	POLR2A	chr15:45259742-45259749	A549	lung:	n/a	n/a
43	POLR2A	chr15:45259791-45259819	Gliobla	brain:	n/a	n/a
44	POLR2A	chr15:45259834-45259949	A549	lung:	n/a	n/a
45	POU2F2	chr15:45260121-45260295	GM12878	blood:	n/a	n/a
46	RXRA	chr15:45260133-45260327	HepG2	liver:	n/a	n/a
47	ZNF384	chr15:45254340-45254496	K562	blood:	n/a	n/a
48	ZNF384	chr15:45260698-45260893	K562	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DUOX2-4	chr15:45262233-45263376	NONHSAT042205

Variant related genes	Relation type
RNU6-966P	TF binding region
RNU6-1332P	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:46 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs571290126	chr15:45254352-45254353	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs537577679	chr15:45254373-45254374	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs200601589	chr15:45254382-45254383	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs557171702	chr15:45254387-45254388	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs372315421	chr15:45254390-45254391	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs75620509	chr15:45254398-45254399	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs113360757	chr15:45254471-45254472	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs189897770	chr15:45254480-45254481	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs34188520	chr15:45260783-45260784	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs11070438	chr15:45260819-45260820	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
11	rs529569245	chr15:45260823-45260824	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs549246867	chr15:45260841-45260842	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs192929454	chr15:45260892-45260893	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs542780725	chr15:45262234-45262235	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs372986967	chr15:45262250-45262251	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs445211	chr15:45262252-45262253	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs539895	chr15:45262287-45262288	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs540523	chr15:45262292-45262293	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs545669222	chr15:45262315-45262316	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs565176142	chr15:45262316-45262317	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs530930625	chr15:45262352-45262353	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs554058320	chr15:45262435-45262436	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs561324511	chr15:45262466-45262467	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs529929180	chr15:45262479-45262480	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs546788625	chr15:45262493-45262494	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs202192925	chr15:45262675-45262676	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs542419261	chr15:45262694-45262695	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs186409835	chr15:45262709-45262710	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs115746888	chr15:45262839-45262840	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs545169	chr15:45262845-45262846	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs576230062	chr15:45262879-45262880	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs141802993	chr15:45262895-45262896	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs537810928	chr15:45262907-45262908	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs554261973	chr15:45262917-45262918	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs574168325	chr15:45262975-45262976	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs533622926	chr15:45262980-45262981	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs553186420	chr15:45262987-45262988	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs573377208	chr15:45263044-45263045	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs545424556	chr15:45263051-45263052	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs146029793	chr15:45263068-45263069	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs575557778	chr15:45263092-45263093	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs544583300	chr15:45263100-45263101	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs561388924	chr15:45263123-45263124	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs530245575	chr15:45263142-45263143	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs139941184	chr15:45263143-45263144	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs112859658	chr15:45263200-45263201	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	21129771	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21045282	CNVD
Breast cancer	22032731	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Melanoma	17363583	CNVD
Acute myeloid leukemia	19651601	CNVD
Marfan syndrome	17492313	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links