Variant report

Variant	nsv976939
Chromosome Location	chr15:58268302-58272303
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 197 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:197 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4287504	chr15:58268324-58268325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs186250315	chr15:58268339-58268340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs142006203	chr15:58268350-58268351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs12903551	chr15:58268372-58268373	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs190774434	chr15:58268408-58268409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs543048926	chr15:58268495-58268496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs562725684	chr15:58268559-58268560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs182628471	chr15:58268590-58268591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs139841126	chr15:58268599-58268600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs565338303	chr15:58268606-58268607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs527485264	chr15:58268615-58268616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs547608917	chr15:58268634-58268635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs550741693	chr15:58268638-58268639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs113285619	chr15:58268660-58268661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs1837852	chr15:58268689-58268690	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs1837851	chr15:58268699-58268700	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs8032726	chr15:58268710-58268711	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs547470451	chr15:58268729-58268730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs186473634	chr15:58268740-58268741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs558379610	chr15:58268805-58268806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs571763915	chr15:58268823-58268824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs6493970	chr15:58268837-58268838	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs546814423	chr15:58268864-58268865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs112861257	chr15:58268869-58268870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs1837850	chr15:58268890-58268891	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs574030065	chr15:58268916-58268917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs542971943	chr15:58268979-58268980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs563163092	chr15:58268986-58268987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs576192016	chr15:58268988-58268989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs535260353	chr15:58268990-58268991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs565422631	chr15:58269033-58269034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs114788520	chr15:58269035-58269036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs547644103	chr15:58269038-58269039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs374577365	chr15:58269071-58269072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs190906320	chr15:58269095-58269096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs529873202	chr15:58269113-58269114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs549222014	chr15:58269119-58269120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs183119279	chr15:58269145-58269146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs569894026	chr15:58269147-58269148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs538261662	chr15:58269153-58269154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs552147859	chr15:58269170-58269171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs565479726	chr15:58269205-58269206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs117222883	chr15:58269257-58269258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs553974102	chr15:58269258-58269259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs35805904	chr15:58269295-58269296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs567534952	chr15:58269343-58269344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs187434882	chr15:58269360-58269361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs533151298	chr15:58269374-58269375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs4775007	chr15:58269383-58269384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs576670514	chr15:58269409-58269410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Holoprosencephaly	21359414	CNVD
Myelofibrosis	22110671	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58253800-58271600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr15:58253800-58284800	Weak transcription	Ovary	ovary
3	chr15:58258000-58272200	Weak transcription	Right Ventricle	heart
4	chr15:58260400-58272000	Weak transcription	Fetal Kidney	kidney
5	chr15:58262600-58287800	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:58262800-58272000	Weak transcription	K562	blood
7	chr15:58271600-58272600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr15:58272000-58272200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:58272000-58272600	ZNF genes & repeats	Fetal Stomach	stomach
10	chr15:58272000-58272800	Strong transcription	Fetal Kidney	kidney
11	chr15:58272000-58272800	Strong transcription	K562	blood
12	chr15:58272200-58272400	Bivalent Enhancer	Thymus	Thymus
13	chr15:58272200-58272800	Enhancers	Right Ventricle	heart

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