Variant report

Variant	nsv977174
Chromosome Location	chr13:67260656-67261770
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:67065287..67067165-chr13:67261665..67264552,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 98 )

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs114467576	chr13:67260677-67260678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs369311872	chr13:67260706-67260707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs9571624	chr13:67260716-67260717	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs577588055	chr13:67260738-67260739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs373275887	chr13:67260756-67260757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs530809950	chr13:67260794-67260795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs544559263	chr13:67260795-67260796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs550997212	chr13:67260816-67260817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs185782550	chr13:67260821-67260822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs190642747	chr13:67260835-67260836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs376393980	chr13:67260865-67260866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs9571625	chr13:67260870-67260871	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs547136200	chr13:67260893-67260894	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs373468711	chr13:67260914-67260915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs565844320	chr13:67260977-67260978	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs9571626	chr13:67260979-67260980	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs150293470	chr13:67261056-67261057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs536955861	chr13:67261101-67261102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs556869041	chr13:67261123-67261124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs74093129	chr13:67261136-67261137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs542283134	chr13:67261141-67261142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs552685991	chr13:67261145-67261146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs542461410	chr13:67261199-67261200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs573082655	chr13:67261212-67261213	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs545246611	chr13:67261220-67261221	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs565432840	chr13:67261247-67261248	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs575851440	chr13:67261262-67261263	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs544578497	chr13:67261286-67261287	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs561306160	chr13:67261292-67261293	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs187876584	chr13:67261325-67261326	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs547099402	chr13:67261335-67261336	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs560594766	chr13:67261353-67261354	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs976823	chr13:67261374-67261375	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs560907180	chr13:67261397-67261398	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs79164623	chr13:67261447-67261448	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs571356360	chr13:67261452-67261453	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs374570937	chr13:67261496-67261497	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs528423405	chr13:67261554-67261555	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs113537337	chr13:67261591-67261592	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs550616902	chr13:67261645-67261646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs572032800	chr13:67261657-67261658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs566909408	chr13:67261661-67261662	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs113019715	chr13:67261679-67261680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs112906923	chr13:67261685-67261686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs191440800	chr13:67261737-67261738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:98)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Squamous cell cancer	20885788	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	17245344	CNVD
Prostate cancer	18632612	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Retinoblastoma	19183342	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Merkel cell carcinoma	19020549	CNVD
Basal cell lymphoma	17053054	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	21858162	CNVD
Glioblastoma multiforme	21922591	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Breast cancer	17393978	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Colorectal cancer	16774939	CNVD
Adenoid cystic carcinoma	17372589	CNVD
abnormal development	18461090	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Prostate cancer	16461572	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Schizophrenia	23813976	CNVD
Prostate cancer	22341455	CNVD
Myelofibrosis	22110671	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67260000-67263400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:67261200-67261600	Enhancers	Muscle Satellite Cultured Cells	--

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