Variant report

Variant	nsv977182
Chromosome Location	chr13:88453337-88457326
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:12)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:14)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:12 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr13:88456204-88456961	Hela-S3	cervix:	n/a	n/a
2	CEBPB	chr13:88456632-88456846	HepG2	liver:	n/a	n/a
3	FOXA1	chr13:88456405-88456602	T-47D	breast:	n/a	chr13:88456506-88456521
4	FOXA1	chr13:88456348-88456617	T-47D	breast:	n/a	chr13:88456506-88456521
5	FOXA1	chr13:88456403-88456632	HepG2	liver:	n/a	chr13:88456506-88456521
6	FOXA2	chr13:88456325-88456613	A549	lung:	n/a	n/a
7	MXI1	chr13:88455757-88456025	Hela-S3	cervix:	n/a	n/a
8	NFIC	chr13:88456162-88456806	ECC-1	luminal epithelium:	n/a	chr13:88456485-88456501
9	NFIC	chr13:88456240-88456655	ECC-1	luminal epithelium:	n/a	chr13:88456485-88456501
10	POLR2A	chr13:88454092-88454201	Hela-S3	cervix:	n/a	n/a
11	SRF	chr13:88456296-88456643	ECC-1	luminal epithelium:	n/a	n/a
12	STAT3	chr13:88456467-88456579	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:14 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-15	chr13:88453481-88453534	ENSG00000223404.3
2	lnc-SLITRK5-3	chr13:88456028-88456063	NONHSAT034598
3	lnc-SLITRK6-15	chr13:88455265-88455619	ENSG00000223404.3
4	lnc-SLITRK6-15	chr13:88456029-88456063	ENSG00000223404.3
5	lnc-SLITRK6-15	chr13:88453298-88453534	NR_104059
6	lnc-SLITRK5-3	chr13:88453291-88453534	XLOC_010464
7	lnc-SLITRK5-3	chr13:88454152-88455471	NONHSAT034598
8	lnc-SLITRK5-3	chr13:88456029-88456063	XLOC_010464
9	lnc-SLITRK5-3	chr13:88452987-88453601	NONHSAT034598
10	lnc-SLITRK6-15	chr13:88455265-88455329	ENSG00000223404.3
11	lnc-SLITRK6-15	chr13:88456029-88456061	NR_104059
12	lnc-SLITRK5-3	chr13:88455265-88455329	XLOC_010464
13	lnc-SLITRK6-15	chr13:88453291-88453534	ENSG00000223404.3
14	lnc-SLITRK6-15	chr13:88455265-88455329	NR_104059

No data

Variant related genes	Relation type
LINC00397	TF binding region

Extended variants
information (count: 138 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:138 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs181544043	chr13:88453346-88453347	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs561563526	chr13:88453350-88453351	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs529027207	chr13:88453386-88453387	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs11838848	chr13:88453419-88453420	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs547094172	chr13:88453502-88453503	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs565728259	chr13:88453514-88453515	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs7987290	chr13:88453522-88453523	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs551353949	chr13:88453523-88453524	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs570281424	chr13:88453583-88453584	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs77761717	chr13:88453595-88453596	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs559167522	chr13:88453627-88453628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs528177708	chr13:88453684-88453685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs530639418	chr13:88453712-88453713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs185922654	chr13:88453718-88453719	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs189652095	chr13:88453719-88453720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs574304955	chr13:88453764-88453765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs535174954	chr13:88453769-88453770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs180859686	chr13:88453835-88453836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs553197544	chr13:88453839-88453840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs549082601	chr13:88453854-88453855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs578049012	chr13:88453907-88453908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs567296376	chr13:88453984-88453985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs538456625	chr13:88454008-88454009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs551218924	chr13:88454010-88454011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs545102770	chr13:88454016-88454017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs186109463	chr13:88454033-88454034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs548107002	chr13:88454037-88454038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs7988362	chr13:88454079-88454080	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs543335879	chr13:88454117-88454118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs74103758	chr13:88454140-88454141	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs529062980	chr13:88454158-88454159	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs74103759	chr13:88454178-88454179	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs190964770	chr13:88454307-88454308	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs533023089	chr13:88454339-88454340	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs182798784	chr13:88454392-88454393	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs567920561	chr13:88454409-88454410	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs569649270	chr13:88454411-88454412	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs530487926	chr13:88454449-88454450	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs566252772	chr13:88454453-88454454	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs549699027	chr13:88454471-88454472	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs372893403	chr13:88454511-88454512	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs540078286	chr13:88454535-88454536	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs558089548	chr13:88454576-88454577	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs187100647	chr13:88454617-88454618	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs535272013	chr13:88454678-88454679	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs553512904	chr13:88454707-88454708	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs569879433	chr13:88454727-88454728	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs571686607	chr13:88454736-88454737	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs536950408	chr13:88454769-88454770	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs113104320	chr13:88454779-88454780	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Breast cancer	17142309	CNVD
Mental retardation	17847001	CNVD
Medulloblastoma	19270706	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:88452800-88456200	Weak transcription	Hela-S3	cervix
2	chr13:88456200-88456800	Enhancers	Hela-S3	cervix
3	chr13:88456200-88457000	Enhancers	A549	lung
4	chr13:88456800-88458000	Weak transcription	Hela-S3	cervix
5	chr13:88457000-88461000	Weak transcription	A549	lung

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