Variant report

Variant	nsv977258
Chromosome Location	chr13:69563696-69564891
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs544937558	chr13:69563724-69563725	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs199898783	chr13:69563863-69563864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs148704523	chr13:69563891-69563892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs113438961	chr13:69563937-69563938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs190393653	chr13:69563942-69563943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs534734313	chr13:69563968-69563969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs568922789	chr13:69563973-69563974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs552045142	chr13:69563987-69563988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs73211745	chr13:69564059-69564060	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs537598877	chr13:69564066-69564067	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs557611840	chr13:69564107-69564108	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs559607777	chr13:69564132-69564133	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs536337978	chr13:69564218-69564219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs552821441	chr13:69564222-69564223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs572794047	chr13:69564281-69564282	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs544719418	chr13:69564288-69564289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs181669388	chr13:69564295-69564296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs139766527	chr13:69564297-69564298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs369770018	chr13:69564306-69564307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs4884822	chr13:69564307-69564308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs141472874	chr13:69564342-69564343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs560516819	chr13:69564358-69564359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs543972949	chr13:69564383-69564384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs560762748	chr13:69564387-69564388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs375979202	chr13:69564417-69564418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs547772663	chr13:69564431-69564432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs71196229	chr13:69564452-69564453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs186663356	chr13:69564519-69564520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs543083778	chr13:69564520-69564521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs9529473	chr13:69564539-69564540	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs9541680	chr13:69564555-69564556	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs9564514	chr13:69564623-69564624	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs189658667	chr13:69564694-69564695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs181152520	chr13:69564695-69564696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs139303789	chr13:69564708-69564709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs550466868	chr13:69564762-69564763	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs372865846	chr13:69564784-69564785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs9541681	chr13:69564809-69564810	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs536493469	chr13:69564888-69564889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Squamous cell cancer	20885788	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	17245344	CNVD
Prostate cancer	18632612	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Retinoblastoma	19183342	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Merkel cell carcinoma	19020549	CNVD
Basal cell lymphoma	17053054	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	21858162	CNVD
Glioblastoma multiforme	21922591	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Breast cancer	17393978	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Colorectal cancer	16774939	CNVD
Adenoid cystic carcinoma	17372589	CNVD
abnormal development	18461090	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Prostate cancer	16461572	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Myelofibrosis	22110671	CNVD
Esophageal cancer	21851588	CNVD
Breast cancer	22737080	CNVD
T-cell lymphomas	22341440	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69558000-69570200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:69563600-69563800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr13:69563800-69569800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr13:69564000-69564200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:69564200-69569400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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