Variant report

Variant	nsv977263
Chromosome Location	chr13:85739262-85749699
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-2	chr13:85741303-85741462	XLOC_010680
2	lnc-SLITRK6-2	chr13:85742321-85742439	XLOC_010680
3	lnc-SLITRK6-2	chr13:85743219-85743317	XLOC_010680

Variant related genes	Relation type
LIMK1	miRNA target sites
LIMD2	miRNA target sites
LIMD1	miRNA target sites

Extended variants
information (count: 100 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:100 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs564041829	chr13:85741261-85741262	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs368706957	chr13:85741262-85741263	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs569947125	chr13:85741265-85741266	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs182090200	chr13:85741312-85741313	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
5	rs372345838	chr13:85741314-85741315	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
6	rs543710197	chr13:85741364-85741365	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
7	rs1500692	chr13:85741432-85741433	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs551215188	chr13:85741441-85741442	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs188316901	chr13:85741624-85741625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs71440160	chr13:85741626-85741627	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs531133128	chr13:85741710-85741711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs144935235	chr13:85741831-85741832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs567596974	chr13:85741840-85741841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs150892258	chr13:85741860-85741861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs59240575	chr13:85741862-85741863	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs565645790	chr13:85741895-85741896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs539469985	chr13:85741896-85741897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs548357866	chr13:85741935-85741936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs557686657	chr13:85741942-85741943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs180732513	chr13:85741958-85741959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs185777662	chr13:85742017-85742018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs34623489	chr13:85742038-85742039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs201465551	chr13:85742039-85742040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs35362340	chr13:85742040-85742041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs200002922	chr13:85742041-85742042	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs35431291	chr13:85742042-85742043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs527753164	chr13:85742044-85742045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs573983535	chr13:85742046-85742047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs201580569	chr13:85742065-85742066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs368167466	chr13:85742066-85742067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs5006062	chr13:85742067-85742068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs139382676	chr13:85742068-85742069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs66502062	chr13:85742069-85742070	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs183793326	chr13:85742093-85742094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs12427781	chr13:85742129-85742130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs545457155	chr13:85742131-85742132	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs113032122	chr13:85742143-85742144	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs76546366	chr13:85742176-85742177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs557475567	chr13:85742178-85742179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs145275615	chr13:85742191-85742192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs186700147	chr13:85742225-85742226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs17079378	chr13:85742235-85742236	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs546990746	chr13:85742264-85742265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs565640180	chr13:85742295-85742296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs3861802	chr13:85742365-85742366	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs551485188	chr13:85742436-85742437	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs569631920	chr13:85742445-85742446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs537292809	chr13:85742448-85742449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs141286011	chr13:85742476-85742477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs573995931	chr13:85742532-85742533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	18632612	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Breast cancer	21858162	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Urothelial cell carcinoma	18451213	CNVD
Developmental delay	19490664	CNVD
Neurodevelopmental disorder	22521361	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85741200-85741400	Enhancers	Fetal Lung	lung
2	chr13:85741600-85742600	Weak transcription	Fetal Lung	lung
3	chr13:85742600-85743000	Enhancers	Fetal Lung	lung
4	chr13:85743000-85743200	Weak transcription	Fetal Lung	lung
5	chr13:85743200-85743600	Enhancers	Fetal Lung	lung

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