Variant report

Variant	nsv977293
Chromosome Location	chr13:93320277-93324021
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:150 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs183417181	chr13:93320284-93320285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs530183710	chr13:93320286-93320287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs570815915	chr13:93320336-93320337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs61975934	chr13:93320347-93320348	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs568679170	chr13:93320356-93320357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs566517652	chr13:93320429-93320430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs75714729	chr13:93320451-93320452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs9523759	chr13:93320578-93320579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs12855696	chr13:93320600-93320601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs188354536	chr13:93320633-93320634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs145882101	chr13:93320657-93320658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs569139171	chr13:93320688-93320689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs201639342	chr13:93320689-93320690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs538062117	chr13:93320710-93320711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs114096226	chr13:93320801-93320802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs148974994	chr13:93320840-93320841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs61975935	chr13:93320858-93320859	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs112278870	chr13:93320886-93320887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs572875117	chr13:93320933-93320934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs193014067	chr13:93320945-93320946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs61975936	chr13:93320955-93320956	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs151167503	chr13:93320985-93320986	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs141241366	chr13:93320986-93320987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs544099583	chr13:93320999-93321000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs200506184	chr13:93321002-93321003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs61975937	chr13:93321006-93321007	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs71427589	chr13:93321009-93321010	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs560139737	chr13:93321031-93321032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs28679493	chr13:93321101-93321102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs184361202	chr13:93321107-93321108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs540314030	chr13:93321174-93321175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs111925051	chr13:93321215-93321216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs146919452	chr13:93321298-93321299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs569230515	chr13:93321300-93321301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs538483962	chr13:93321320-93321321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs548508842	chr13:93321372-93321373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs61975938	chr13:93321381-93321382	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs137932776	chr13:93321413-93321414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs545802715	chr13:93321414-93321415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs11839769	chr13:93321423-93321424	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs1933188	chr13:93321432-93321433	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs538657189	chr13:93321436-93321437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs529561015	chr13:93321447-93321448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs34065542	chr13:93321486-93321487	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs187600738	chr13:93321487-93321488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs78740817	chr13:93321554-93321555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs560970479	chr13:93321555-93321556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs138664331	chr13:93321589-93321590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs540404208	chr13:93321599-93321600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs192586722	chr13:93321609-93321610	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Medulloblastoma	19270706	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Acute myeloid leukemia	19651601	CNVD
Effusion lymphoma	18079361	CNVD
Developmental delay	21147756	CNVD
Cancer	20164920	CNVD
Melanoma	20877625	CNVD
Colorectal cancer	21645411	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93307400-93321800	Weak transcription	Right Atrium	heart
2	chr13:93321600-93322200	Enhancers	Fetal Brain Male	brain
3	chr13:93321800-93322600	Enhancers	Right Atrium	heart
4	chr13:93322600-93326200	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links