Variant report

Variant	nsv977348
Chromosome Location	chr13:89897459-89901862
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-25	chr13:89901072-89902354	NONHSAT034625

Extended variants
information (count: 168 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:168 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs185475190	chr13:89897461-89897462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs9522474	chr13:89897477-89897478	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs539315120	chr13:89897498-89897499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs73577805	chr13:89897501-89897502	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs190087442	chr13:89897502-89897503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs375666023	chr13:89897520-89897521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs76934827	chr13:89897538-89897539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs314561	chr13:89897568-89897569	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs9588557	chr13:89897593-89897594	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs565996275	chr13:89897693-89897694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs533223261	chr13:89897714-89897715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs373469846	chr13:89897728-89897729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs314562	chr13:89897779-89897780	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs314563	chr13:89897793-89897794	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs536846987	chr13:89897794-89897795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs556654418	chr13:89897819-89897820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs138236233	chr13:89897822-89897823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs182339752	chr13:89897904-89897905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs535469680	chr13:89897913-89897914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs9560260	chr13:89897937-89897938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs544494656	chr13:89897987-89897988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs553708274	chr13:89897995-89897996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs572406467	chr13:89898061-89898062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs546133953	chr13:89898064-89898065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs558156995	chr13:89898072-89898073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs77904462	chr13:89898096-89898097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs187814903	chr13:89898124-89898125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs561843049	chr13:89898168-89898169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs528963912	chr13:89898184-89898185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs114752235	chr13:89898275-89898276	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs559346543	chr13:89898282-89898283	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs78312676	chr13:89898286-89898287	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs561600572	chr13:89898298-89898299	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs314564	chr13:89898333-89898334	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs569837984	chr13:89898361-89898362	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs548845697	chr13:89898403-89898404	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs542206036	chr13:89898418-89898419	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs376263568	chr13:89898456-89898457	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs9588558	chr13:89898465-89898466	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs80303825	chr13:89898478-89898479	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs314565	chr13:89898500-89898501	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs75230007	chr13:89898542-89898543	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs57877614	chr13:89898557-89898558	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs367824523	chr13:89898581-89898582	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs539432076	chr13:89898596-89898597	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs138728559	chr13:89898597-89898598	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs576633532	chr13:89898610-89898611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs544011384	chr13:89898639-89898640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs565612919	chr13:89898646-89898647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs573784045	chr13:89898741-89898742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Mental retardation	17847001	CNVD
Medulloblastoma	19270706	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Cancer	20164920	CNVD
Non-small cell lung cancer	16651412	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89885000-89902400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:89898200-89898600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr13:89898200-89898600	Enhancers	Stomach Mucosa	stomach
4	chr13:89898600-89899600	Weak transcription	Stomach Mucosa	stomach
5	chr13:89899600-89899800	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links