Variant report

Variant	nsv977445
Chromosome Location	chr14:22102238-22103350
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:183)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:22102503-22102524	ProgFib	skin:	n/a	n/a
2	CTCF	chr14:22102529-22102596	Fibrobl	skin:	n/a	n/a
3	POLR2A	chr14:22102620-22102628	MCF-7	breast:	n/a	n/a
4	POLR2A	chr14:22102260-22102268	A549	lung:	n/a	n/a
5	POLR2A	chr14:22102388-22102590	MCF-7	breast:	n/a	n/a
6	POLR2A	chr14:22102280-22102711	A549	lung:	n/a	n/a
7	POLR2A	chr14:22102525-22102654	MCF-7	breast:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:22103031-22103081	MCF10A-Er-Src	breast:	n/a
2	chr14:22103310-22103360	HEK293	kidney:	embryo
3	chr14:22103031-22103081	SK-N-SH	brain:	n/a
4	chr14:22103031-22103081	PANC-1	pancreas:	n/a
5	chr14:22103031-22103081	Hela-S3	cervix:	n/a
6	chr14:22103082-22103132	Hepatocyte	liver:	n/a
7	chr14:22103310-22103360	SKMC	muscle:	n/a
8	chr14:22103082-22103132	GM19239	blood:	n/a
9	chr14:22103031-22103081	NH-A	brain:	n/a
10	chr14:22103031-22103081	HUVEC	blood vessel:	n/a
11	chr14:22103082-22103132	NHDF-neo	bronchial:	n/a
12	chr14:22103310-22103360	NT2-D1	testis:	n/a
13	chr14:22103031-22103081	HRE	kidney:	n/a
14	chr14:22103031-22103081	AoSMC	blood vessel:	n/a
15	chr14:22103310-22103360	AG10803	skin:	n/a
16	chr14:22103082-22103132	BE2_C	brain:	n/a
17	chr14:22103310-22103360	NH-A	brain:	n/a
18	chr14:22103082-22103132	AG04450	lung:	fetal
19	chr14:22103310-22103360	LNCaP	prostate:	n/a
20	chr14:22103031-22103081	HEEpiC	esophagus:	n/a
21	chr14:22103310-22103360	ovcar-3	ovarian:	n/a
22	chr14:22103082-22103132	AoSMC	blood vessel:	n/a
23	chr14:22103031-22103081	LNCaP	prostate:	n/a
24	chr14:22103310-22103360	BJ	skin:	n/a
25	chr14:22103082-22103132	ProgFib	skin:	n/a
26	chr14:22103031-22103081	AG04450	lung:	fetal
27	chr14:22103031-22103081	Jurkat	blood:	n/a
28	chr14:22103310-22103360	SK-N-SH_RA	brain:	n/a
29	chr14:22103310-22103360	AoSMC	blood vessel:	n/a
30	chr14:22103310-22103360	HPAEpiC	pulmonary alveolar:	n/a
31	chr14:22103031-22103081	SK-N-MC	brain:	n/a
32	chr14:22103310-22103360	MCF-7	breast:	n/a
33	chr14:22103031-22103081	GM19239	blood:	n/a
34	chr14:22103031-22103081	HAEpiC	amniotic membrane:	n/a
35	chr14:22103031-22103081	HIPEpiC	eye:	n/a
36	chr14:22103031-22103081	AG09319	gingival:	n/a
37	chr14:22103310-22103360	HRPEpiC	eye:	n/a
38	chr14:22103310-22103360	HCT-116	colon:	n/a
39	chr14:22103082-22103132	HPAEpiC	pulmonary alveolar:	n/a
40	chr14:22103031-22103081	GM12892	blood:	n/a
41	chr14:22103082-22103132	SK-N-SH	brain:	n/a
42	chr14:22103031-22103081	HPAEpiC	pulmonary alveolar:	n/a
43	chr14:22103082-22103132	PrEC	prostate:	n/a
44	chr14:22103310-22103360	PrEC	prostate:	n/a
45	chr14:22103031-22103081	IMR90	lung:	fetal
46	chr14:22103310-22103360	HL-60	blood:	n/a
47	chr14:22103310-22103360	Jurkat	blood:	n/a
48	chr14:22103310-22103360	GM12878	blood:	n/a
49	chr14:22103310-22103360	SAEC	small airway:	n/a
50	chr14:22103310-22103360	HNPCEpiC	eye:	n/a

No data

Variant related genes	Relation type
OR10G2	TF binding region
OR10G2	CpG island

Extended variants
information (count: 1 )
Associated
traits (count: 63 )

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs28586589	chr14:22103310-22103311	Inactive region	CpG island	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:63)

Disease	PMID	Source
Cancer	20164920	CNVD
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cone-rod dystrophy	18421352	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Breast cancer	17899364	CNVD
Colorectal cancer	16774939	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Alzheimer''s disease	21482944	CNVD
Mental retardation	19951919	CNVD
Neuroblastoma	21899760	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Esophageal cancer	20955586	CNVD
Neurodevelopmental disorder	22521361	CNVD
Lung cancer	16773561	CNVD
Multiple myeloma	16616336	CNVD
Cancer	17440070	CNVD
Breast cancer	16272173	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Epilepsy	20736978	CNVD
Mental retardation	20736978	CNVD
severe speech impairment	20736978	CNVD
speech impairment	20736978	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Chronic myeloid leukemia	20724749	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21858162	CNVD
Autism	22102821	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links