Variant report

Variant	nsv977477
Chromosome Location	chr14:64257537-64259998
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64253240..64254789-chr14:64255821..64258714,2	MCF-7	breast:
2	chr14:64258294..64260685-chr14:64264198..64267177,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:84 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs549128066	chr14:64257565-64257566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs369157042	chr14:64257587-64257588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs569213622	chr14:64257621-64257622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs531926524	chr14:64257659-64257660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs2356995	chr14:64257679-64257680	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs557322229	chr14:64257685-64257686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs371722388	chr14:64257696-64257697	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs537531642	chr14:64257709-64257710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs533529485	chr14:64257710-64257711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs553853830	chr14:64257744-64257745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs112764916	chr14:64257745-64257746	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs111812005	chr14:64257781-64257782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs190893507	chr14:64257827-64257828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs182941796	chr14:64257847-64257848	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs151085465	chr14:64257854-64257855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs558551420	chr14:64257973-64257974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs55830411	chr14:64257981-64257982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs577987821	chr14:64258042-64258043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs141064902	chr14:64258049-64258050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs560225093	chr14:64258065-64258066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs8008552	chr14:64258080-64258081	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs375445863	chr14:64258186-64258187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs536638242	chr14:64258317-64258318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs111246570	chr14:64258327-64258328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs79450446	chr14:64258373-64258374	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs73267670	chr14:64258380-64258381	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs542320641	chr14:64258388-64258389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs373633881	chr14:64258411-64258412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs187616585	chr14:64258426-64258427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs192499953	chr14:64258442-64258443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs368143802	chr14:64258445-64258446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs567371449	chr14:64258447-64258448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs536398038	chr14:64258456-64258457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs12883973	chr14:64258476-64258477	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs182872888	chr14:64258489-64258490	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs202098008	chr14:64258503-64258504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs11845533	chr14:64258504-64258505	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs368158973	chr14:64258520-64258521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs544712183	chr14:64258524-64258525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs35040398	chr14:64258544-64258545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs386778274	chr14:64258595-64258596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs386778275	chr14:64258603-64258604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs35454691	chr14:64258609-64258610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs368812587	chr14:64258610-64258611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs372873493	chr14:64258662-64258663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs370463860	chr14:64258673-64258674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs57974457	chr14:64258678-64258679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs377542690	chr14:64258679-64258680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs573686074	chr14:64258683-64258684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs542745804	chr14:64258717-64258718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Chronic myeloid leukemia	20724749	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Colorectal cancer	16272173	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Breast cancer	22032731	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16774939	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	17603634	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Neuroblastoma	18923191	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Barrett''s syndrome	19417022	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Leukemia	18688285	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD
abnormal development	18461090	CNVD
Autism	22543975	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64254600-64275200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:64255400-64265600	Weak transcription	Placenta	Placenta
3	chr14:64255400-64270000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:64255600-64260000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:64256200-64272200	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links