Variant report
Variant | nsv977500 |
---|---|
Chromosome Location | chr14:96922788-96924263 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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No data |
No data |
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-ATG2B-6 | chr14:96922913-96923378 | NONHSAT039527 |
No data |
No data |
Variant related genes | Relation type |
---|---|
RPL23AP10 | TF binding region |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs549536560 | chr14:96922810-96922811 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs201326540 | chr14:96922849-96922850 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs562905818 | chr14:96922864-96922865 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs113712090 | chr14:96922872-96922873 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
5 | rs188878588 | chr14:96922890-96922891 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs550784356 | chr14:96922892-96922893 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
7 | rs568800710 | chr14:96922917-96922918 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
8 | rs140214316 | chr14:96922939-96922940 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
9 | rs548917871 | chr14:96922940-96922941 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
10 | rs12323934 | chr14:96922948-96922949 | Weak transcription Enhancers | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
11 | rs576433458 | chr14:96922954-96922955 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
12 | rs535499872 | chr14:96922975-96922976 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
13 | rs542326907 | chr14:96922991-96922992 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
14 | rs114948078 | chr14:96923029-96923030 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
15 | rs192701390 | chr14:96923054-96923055 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
16 | rs538842924 | chr14:96923062-96923063 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
17 | rs557630248 | chr14:96923083-96923084 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
18 | rs576007821 | chr14:96923092-96923093 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
19 | rs562201562 | chr14:96923099-96923100 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
20 | rs62617092 | chr14:96923113-96923114 | Weak transcription Enhancers | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
21 | rs560830140 | chr14:96923121-96923122 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
22 | rs144158787 | chr14:96923122-96923123 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
23 | rs529890204 | chr14:96923126-96923127 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
24 | rs114499979 | chr14:96923134-96923135 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
25 | rs111980707 | chr14:96923146-96923147 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
26 | rs550356364 | chr14:96923190-96923191 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
27 | rs547801898 | chr14:96923193-96923194 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
28 | rs540476722 | chr14:96923212-96923213 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
29 | rs79028601 | chr14:96923217-96923218 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
30 | rs529897270 | chr14:96923221-96923222 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
31 | rs548095349 | chr14:96923225-96923226 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
32 | rs567293992 | chr14:96923240-96923241 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
33 | rs182866054 | chr14:96923260-96923261 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
34 | rs547007516 | chr14:96923286-96923287 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
35 | rs146509527 | chr14:96923339-96923340 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
36 | rs149093465 | chr14:96923340-96923341 | Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
37 | rs35838636 | chr14:96923391-96923392 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs578058563 | chr14:96923392-96923393 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs74370833 | chr14:96923412-96923413 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs557544597 | chr14:96923420-96923421 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs569485774 | chr14:96923460-96923461 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs143124063 | chr14:96923520-96923521 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs140987725 | chr14:96923558-96923559 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs146467595 | chr14:96923640-96923641 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs377070908 | chr14:96923645-96923646 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs539808003 | chr14:96923673-96923674 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs568856698 | chr14:96923688-96923689 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs187489021 | chr14:96923790-96923791 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs531273545 | chr14:96923815-96923816 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs191593418 | chr14:96923827-96923828 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Esophageal cancer | 21851588 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Retinoblastoma | 21504564 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Melanoma | 18172304 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Oral cancer | 21386901 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Neuroblastoma | 19435921 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Breast cancer | 17899364 | CNVD |
Gastrointestinal stromal cancer | 19259404 | CNVD |
Gastrointestinal stromal cancer | 17535989 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Paraganglioma | 17535989 | CNVD |
Pulmonary chondroma | 17535989 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Renal cell carcinoma | 21668985 | CNVD |
Chronic myeloid leukemia | 20724749 | CNVD |
Wilms tumour | 21544195 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Breast cancer | 21858162 | CNVD |
Lung cancer | 18438408 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Malignant mesothelioma | 18160781 | CNVD |
Pleural malignant mesothelioma | 18160781 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Barrett''s syndrome | 19417022 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
cataract | 16735990 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
small cell lung cancer | 20016488 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Developmental delay | 21147756 | CNVD |
Glioblastoma | 21080181 | CNVD |
Cancer | 20164920 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Biliary cancer | 19435499 | CNVD |
Follicular lymphoma | 20505157 | CNVD |
Acute lymphoblastic leukemia | 20139093 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
Glioblastoma multiforme | 21922591 | CNVD |
Breast cancer | 21509527 | CNVD |
Malignant fibrous histiocytomas | 21085701 | CNVD |
Multiple myeloma | 16616336 | CNVD |
small cell lung cancer | 17426248 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Barrett''s adenocarcinoma | 18663352 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Non-small cell lung cancer | 18320023 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:96913000-96926600 | Weak transcription | Pancreas | Pancrea |
2 | chr14:96917200-96954800 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
3 | chr14:96919200-96927000 | Weak transcription | Fetal Intestine Large | intestine |
4 | chr14:96919200-96927200 | Weak transcription | Spleen | Spleen |
5 | chr14:96919400-96926800 | Weak transcription | Fetal Intestine Small | intestine |
6 | chr14:96920400-96924200 | Weak transcription | Fetal Thymus | thymus |
7 | chr14:96922200-96923800 | Weak transcription | HepG2 | liver |
8 | chr14:96922600-96928400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
9 | chr14:96922800-96923200 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
10 | chr14:96923800-96924600 | Enhancers | HepG2 | liver |
11 | chr14:96924200-96924600 | Enhancers | Fetal Thymus | thymus |