Variant report
| Variant | nsv977604 |
|---|---|
| Chromosome Location | chr14:47879308-47882431 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs531499852 | chr14:47880425-47880426 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs377515148 | chr14:47880474-47880475 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs535739432 | chr14:47880511-47880512 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs17118562 | chr14:47880539-47880540 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs565713082 | chr14:47880548-47880549 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs534811303 | chr14:47880550-47880551 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs557794227 | chr14:47880571-47880572 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs577823785 | chr14:47880629-47880630 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs185651747 | chr14:47880630-47880631 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs557526172 | chr14:47880633-47880634 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs370200276 | chr14:47880709-47880710 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs551303778 | chr14:47880741-47880742 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs570887972 | chr14:47880758-47880759 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs373114315 | chr14:47880905-47880906 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs543289563 | chr14:47880959-47880960 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs8009848 | chr14:47880960-47880961 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
Variant related diseases (count:55)
| Disease | PMID | Source |
|---|---|---|
| Esophageal cancer | 21851588 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Retinoblastoma | 21504564 | CNVD |
| High-proliferative meningiomas | 17937814 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Autism | 22495311 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| Cancer | 21637783 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Melanoma | 18172304 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Colorectal cancer | 16774939 | CNVD |
| Neuroblastoma | 19435921 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Breast cancer | 17899364 | CNVD |
| Gastrointestinal stromal cancer | 19259404 | CNVD |
| Gastrointestinal stromal cancer | 17535989 | CNVD |
| Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
| Paraganglioma | 17535989 | CNVD |
| Pulmonary chondroma | 17535989 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Gastrointestinal stromal cancer | 16982739 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Gastrointestinal stromal cancer | 20818650 | CNVD |
| Renal cell carcinoma | 21668985 | CNVD |
| Chronic myeloid leukemia | 20724749 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| Cancer | 21183584 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Renal cell carcinoma | 18194544 | CNVD |
| Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Acute lymphoblastic leukemia | 21098271 | CNVD |
| Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
| Gastric cancer | 18160780 | CNVD |
| Bipolar disorder | 19214233 | CNVD |
| Schizophrenia | 20967226 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:47880400-47880800 | Enhancers | Fetal Brain Female | brain |
| 2 | chr14:47880400-47881000 | Enhancers | Fetal Brain Male | brain |
