Variant report

Variant	nsv977700
Chromosome Location	chr15:35373541-35377380
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:26)
CpG islands
(count:122)
Chromatin interactive
region (count:1)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:26 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:35375349-35375384	HepG2	liver:	n/a	n/a
2	CTCF	chr15:35377037-35377136	GM13976	blood:	n/a	n/a
3	CTCF	chr15:35376717-35376736	GM13977	blood:	n/a	n/a
4	CTCF	chr15:35375372-35375450	Kidney_OC	kidney:	n/a	n/a
5	CTCF	chr15:35376744-35376778	GM13977	blood:	n/a	n/a
6	CTCF	chr15:35376460-35376610	HepG2	liver:	n/a	n/a
7	CTCF	chr15:35375378-35375462	GM10248	blood:	n/a	n/a
8	FOXA1	chr15:35374957-35375631	HepG2	liver:	n/a	n/a
9	FOXA1	chr15:35375097-35375595	HepG2	liver:	n/a	n/a
10	FOXA2	chr15:35375189-35375480	HepG2	liver:	n/a	n/a
11	FOXA2	chr15:35375092-35375514	A549	lung:	n/a	n/a
12	JUND	chr15:35376512-35376707	HepG2	liver:	n/a	n/a
13	NR2F2	chr15:35375233-35375415	K562	blood:	n/a	n/a
14	NR2F2	chr15:35375147-35375508	K562	blood:	n/a	n/a
15	NR3C1	chr15:35376364-35376840	A549	lung:	n/a	n/a
16	NR3C1	chr15:35376315-35376910	A549	lung:	n/a	n/a
17	NR3C1	chr15:35376392-35376816	A549	lung:	n/a	n/a
18	NR3C1	chr15:35376332-35376884	A549	lung:	n/a	n/a
19	NR3C1	chr15:35376204-35377023	A549	lung:	n/a	n/a
20	NR3C1	chr15:35376288-35376964	A549	lung:	n/a	n/a
21	NR3C1	chr15:35376506-35376764	ECC-1	luminal epithelium:	n/a	n/a
22	NR3C1	chr15:35375226-35375457	A549	lung:	n/a	n/a
23	RXRA	chr15:35375189-35375465	HepG2	liver:	n/a	n/a
24	SETDB1	chr15:35374059-35374380	U2OS	brain:	n/a	n/a
25	SP1	chr15:35375149-35375536	HepG2	liver:	n/a	n/a
26	ZNF143	chr15:35374352-35374363	H1-hESC	embryonic stem cell:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:35375018-35375068	T-47D	breast:	n/a
2	chr15:35375018-35375068	HAEpiC	amniotic membrane:	n/a
3	chr15:35375018-35375068	ProgFib	skin:	n/a
4	chr15:35374148-35374198	RPTEC	kidney:	n/a
5	chr15:35375018-35375068	HCPEpiC	choroid plexus:	n/a
6	chr15:35375018-35375068	LNCaP	prostate:	n/a
7	chr15:35374148-35374198	AG10803	skin:	n/a
8	chr15:35374148-35374198	ovcar-3	ovarian:	n/a
9	chr15:35375018-35375068	U87	brain:	n/a
10	chr15:35374148-35374198	GM12892	blood:	n/a
11	chr15:35374148-35374198	SK-N-MC	brain:	n/a
12	chr15:35374148-35374198	SK-N-SH_RA	brain:	n/a
13	chr15:35375018-35375068	AoSMC	blood vessel:	n/a
14	chr15:35375018-35375068	GM06990	blood:	n/a
15	chr15:35374148-35374198	BE2_C	brain:	n/a
16	chr15:35374148-35374198	GM19239	blood:	n/a
17	chr15:35375018-35375068	PFSK-1	brain:	n/a
18	chr15:35374148-35374198	Hela-S3	cervix:	n/a
19	chr15:35374148-35374198	HPAEpiC	pulmonary alveolar:	n/a
20	chr15:35375018-35375068	HL-60	blood:	n/a
21	chr15:35374148-35374198	PFSK-1	brain:	n/a
22	chr15:35375018-35375068	Caco-2	colon:	n/a
23	chr15:35375018-35375068	IMR90	lung:	fetal
24	chr15:35374148-35374198	HRPEpiC	eye:	n/a
25	chr15:35375018-35375068	HEK293	kidney:	embryo
26	chr15:35374148-35374198	Caco-2	colon:	n/a
27	chr15:35375018-35375068	HCM	heart:	n/a
28	chr15:35374148-35374198	HAEpiC	amniotic membrane:	n/a
29	chr15:35375018-35375068	HRE	kidney:	n/a
30	chr15:35375018-35375068	AG09319	gingival:	n/a
31	chr15:35374148-35374198	NHDF-neo	bronchial:	n/a
32	chr15:35374148-35374198	Jurkat	blood:	n/a
33	chr15:35374148-35374198	HCF	heart:	n/a
34	chr15:35374148-35374198	PrEC	prostate:	n/a
35	chr15:35375018-35375068	AG04450	lung:	fetal
36	chr15:35374148-35374198	HepG2	liver:	n/a
37	chr15:35375018-35375068	SAEC	small airway:	n/a
38	chr15:35375018-35375068	NB4	blood:	n/a
39	chr15:35374148-35374198	LNCaP	prostate:	n/a
40	chr15:35374148-35374198	AG09309	skin:	n/a
41	chr15:35375018-35375068	K562	blood:	n/a
42	chr15:35375018-35375068	BE2_C	brain:	n/a
43	chr15:35375018-35375068	HMEC	breast:	n/a
44	chr15:35375018-35375068	GM12891	blood:	n/a
45	chr15:35375018-35375068	HEEpiC	esophagus:	n/a
46	chr15:35375018-35375068	A549	lung:	n/a
47	chr15:35374148-35374198	MCF10A-Er-Src	breast:	n/a
48	chr15:35374148-35374198	SK-N-SH	brain:	n/a
49	chr15:35374148-35374198	BJ	skin:	n/a
50	chr15:35375018-35375068	GM12878	blood:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35372169..35374065-chr15:35837227..35839807,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC114546.1-6	chr15:35373345-35373714	NONHSAT041616
2	lnc-AC114546.1-6	chr15:35374996-35375071	NONHSAT041617
3	lnc-AC114546.1-6	chr15:35373528-35373750	NONHSAT041617

No data

Variant related genes	Relation type
NANOGP8	TF binding region
NANOGP8	CpG island
ENSG00000248079	chromatin interactions
ENSG00000134146	chromatin interactions

Extended variants
information (count: 226 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:226 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs553792961	chr15:35373572-35373573	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
2	rs527738959	chr15:35373580-35373581	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
3	rs546472556	chr15:35373583-35373584	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
4	rs564644280	chr15:35373584-35373585	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
5	rs386782959	chr15:35373588-35373589	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
6	rs201606137	chr15:35373589-35373590	Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
7	rs529345346	chr15:35373604-35373605	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
8	rs201115685	chr15:35373607-35373608	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
9	rs535305484	chr15:35373608-35373609	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
10	rs559283585	chr15:35373631-35373632	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
11	rs533159297	chr15:35373721-35373722	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
12	rs557153757	chr15:35373742-35373743	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
13	rs570673139	chr15:35373756-35373757	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs543436784	chr15:35373759-35373760	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs144337809	chr15:35373760-35373761	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs140100370	chr15:35373773-35373774	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs535501153	chr15:35373774-35373775	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs553905556	chr15:35373780-35373781	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs77956082	chr15:35373781-35373782	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs146807206	chr15:35373809-35373810	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs12438286	chr15:35373815-35373816	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs112831389	chr15:35373818-35373819	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs562134703	chr15:35373837-35373838	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs376142317	chr15:35373843-35373844	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs541079704	chr15:35373845-35373846	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs559443130	chr15:35373857-35373858	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs533125563	chr15:35373877-35373878	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs181399242	chr15:35373878-35373879	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs184799030	chr15:35373896-35373897	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs376143383	chr15:35373897-35373898	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs550056374	chr15:35373898-35373899	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs568212375	chr15:35373924-35373925	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs529119733	chr15:35373949-35373950	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs547481564	chr15:35373952-35373953	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs565764789	chr15:35373962-35373963	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs142778479	chr15:35373965-35373966	Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs188348006	chr15:35374000-35374001	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs1686234	chr15:35374006-35374007	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs151229156	chr15:35374029-35374030	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs111525054	chr15:35374038-35374039	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs71248615	chr15:35374052-35374053	ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs113189522	chr15:35374075-35374076	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs573717025	chr15:35374076-35374077	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs573869076	chr15:35374082-35374083	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs541245803	chr15:35374087-35374088	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs35527165	chr15:35374090-35374091	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs142121107	chr15:35374096-35374097	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs577696708	chr15:35374126-35374127	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs75704728	chr15:35374148-35374149	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs545532490	chr15:35374151-35374152	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
HDAC8	0	CNVD
NIPBL	0	CNVD
RAD21	0	CNVD
SMC1A	0	CNVD
SMC3	0	CNVD
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Angelman syndrome	16183798	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Abnormal corpus callosum	21572526	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Autism	19204725	CNVD
Schizophrenia	19204725	CNVD
Schizophrenia	19149910	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Legius syndrome	19443465	CNVD
Holoprosencephaly	21359414	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Cancer	17440070	CNVD
Basal cell lymphoma	17053054	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
lymphocytic leukemia	21291569	CNVD
Cancer	20164920	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35357000-35379400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:35370600-35373600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:35373000-35380800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:35373600-35375200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:35374000-35375000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr15:35374400-35375200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:35374400-35375200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:35375000-35375200	Enhancers	HepG2	liver
9	chr15:35375200-35377800	Weak transcription	HepG2	liver
10	chr15:35375200-35379400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:35375600-35377400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr15:35375600-35381000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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