Variant report

Variant	nsv977723
Chromosome Location	chr15:60162970-60165564
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:80 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs555611137	chr15:60164267-60164268	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs573965760	chr15:60164295-60164296	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs541109451	chr15:60164301-60164302	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs559994898	chr15:60164325-60164326	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs533401263	chr15:60164336-60164337	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs545306137	chr15:60164343-60164344	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs563506511	chr15:60164356-60164357	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs531032947	chr15:60164358-60164359	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs549832218	chr15:60164366-60164367	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs568103591	chr15:60164390-60164391	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs374509625	chr15:60164395-60164396	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs367800943	chr15:60164431-60164432	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs112728356	chr15:60164432-60164433	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs75936077	chr15:60164433-60164434	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs142044003	chr15:60164449-60164450	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs189838470	chr15:60164450-60164451	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs17237089	chr15:60164489-60164490	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs574184923	chr15:60164490-60164491	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs528367503	chr15:60164518-60164519	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs569842998	chr15:60164519-60164520	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs7164737	chr15:60164530-60164531	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs536885772	chr15:60164537-60164538	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs62015005	chr15:60164538-60164539	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs372464737	chr15:60164541-60164542	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs532100456	chr15:60164597-60164598	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs200359648	chr15:60164607-60164608	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs574098953	chr15:60164617-60164618	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs541521246	chr15:60164622-60164623	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs112935624	chr15:60164625-60164626	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs148570143	chr15:60164626-60164627	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs577632764	chr15:60164674-60164675	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs144263097	chr15:60164700-60164701	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs377536540	chr15:60164701-60164702	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs376966063	chr15:60164714-60164715	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs545788395	chr15:60164720-60164721	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs147379646	chr15:60164721-60164722	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs372515833	chr15:60164732-60164733	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs530998700	chr15:60164744-60164745	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs75703987	chr15:60164771-60164772	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs561533921	chr15:60164799-60164800	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs559553143	chr15:60164800-60164801	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs528939430	chr15:60164835-60164836	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs547483074	chr15:60164880-60164881	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs565649095	chr15:60164885-60164886	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs532982850	chr15:60164907-60164908	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs551687495	chr15:60164920-60164921	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs570008495	chr15:60164922-60164923	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs370754481	chr15:60164940-60164941	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs372934931	chr15:60164979-60164980	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs555227379	chr15:60164987-60164988	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Holoprosencephaly	21359414	CNVD
Myelofibrosis	22110671	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Mental retardation	17124404	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60164200-60167000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:60165000-60166800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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