Variant report

Variant	nsv978470
Chromosome Location	chr17:15665351-15667882
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr17:15666698-15666753	Spleen_OC	spleen:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM16-1	chr17:15666900-15669134	NONHSAT145863
2	lnc-TRIM16-3	chr17:15666900-15667083	ENSG00000233193

Variant related genes	Relation type
CDRT15P2	TF binding region
ENSG00000233193	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 126 )

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs550109461	chr17:15666715-15666716	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs113529355	chr17:15666718-15666719	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs564402818	chr17:15666724-15666725	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs576831753	chr17:15666945-15666946	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs375350195	chr17:15666947-15666948	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs547897426	chr17:15666951-15666952	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs185993853	chr17:15666958-15666959	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs572874783	chr17:15666985-15666986	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs541888840	chr17:15667073-15667074	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs564794	chr17:15667090-15667091	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs576034064	chr17:15667091-15667092	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs145370450	chr17:15667100-15667101	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs564716978	chr17:15667117-15667118	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs74413638	chr17:15667133-15667134	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs540720820	chr17:15667180-15667181	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs556562219	chr17:15667266-15667267	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs560258401	chr17:15667414-15667415	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs529238196	chr17:15667431-15667432	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs548995535	chr17:15667445-15667446	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs567988487	chr17:15667496-15667497	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs149132116	chr17:15667526-15667527	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs143416380	chr17:15667529-15667530	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs570629241	chr17:15667552-15667553	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs539303565	chr17:15667592-15667593	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs566604933	chr17:15667623-15667624	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs535417758	chr17:15667656-15667657	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs555424575	chr17:15667662-15667663	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs2619234	chr17:15667685-15667686	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs2586558	chr17:15667696-15667697	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs575814000	chr17:15667700-15667701	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs373440820	chr17:15667720-15667721	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs544896895	chr17:15667730-15667731	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs2920429	chr17:15667765-15667766	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs558019968	chr17:15667769-15667770	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs578120838	chr17:15667771-15667772	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs386795815	chr17:15667827-15667828	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs609781	chr17:15667829-15667830	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs529370064	chr17:15667841-15667842	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs59846299	chr17:15667851-15667852	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs542580874	chr17:15667876-15667877	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:126)

Disease	PMID	Source
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	17603634	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	19435819	CNVD
Non-small cell lung cancer	19010865	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Hepatocellular carcinoma	18803288	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Esophageal adenocarcinoma	18519675	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Chordoma	21602918	CNVD
Miller-Dieker syndrome	22283845	CNVD
Non-syndromic sensorineural hearing loss	17457615	CNVD
Cancer	22429812	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Ewing''s sarcoma	21437220	CNVD
Follicular lymphoma	19010834	CNVD
Colorectal cancer	20709793	CNVD
Acute myeloid leukemia	16864856	CNVD
Endometrial cancer	22040021	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Breast cancer	22028636	CNVD
Breast cancer	20837533	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
colon cancer	17210682	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Chronic lymphocytic leukemia	17971485	CNVD
Basal cell lymphoma	17170743	CNVD
Breast cancer	16461572	CNVD
Colorectal cancer	16272173	CNVD
Follicular lymphoma	17170743	CNVD
Human rectal carcinomas	16397240	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Ovarian cancer	22174824	CNVD
Moyamoya disease	22323933	CNVD
small cell lung cancer	20016488	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Myelodysplastic syndrome	21251322	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20724749	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Acute myeloid leukemia	17237825	CNVD
Colorectal cancer	21645411	CNVD
HIV/AIDS	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
HIV/AIDS	17953491	CNVD
HIV/AIDS	20877625	CNVD
Immune disease	21076436	CNVD
Rheumatoid arthritis	17953491	CNVD
Type 1 diabetes	17953491	CNVD
HIV/AIDS	15637236	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Ovarian cancer	21781307	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Neurofibromatosis	18196300	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Multiple myeloma	16616336	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21509527	CNVD
Pancreatic cancer	21811587	CNVD
Autism	17322880	CNVD
Hereditary neuropathy with liability to pressure palsy	19521722	CNVD
Schizophrenia	19571808	CNVD
Schizophrenia	19955444	CNVD
Charcot-marie-tooth disease	18787571	CNVD
Breast cancer	20409316	CNVD
Autism	18414403	CNVD
Breast cancer	17001317	CNVD
Rhabdomyosarcoma	16790082	CNVD
Myelofibrosis	22110671	CNVD
Peripheral neuropathy	21193943	CNVD
Schizophrenia	20587603	CNVD
Schizophrenia	22958593	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Ovarian cancer	20844748	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Charcot-marie-tooth disease	16463004	CNVD
Osteosarcoma	22292074	CNVD
Charcot	16760730	CNVD
Mental retardation	17901693	CNVD
ovarian endometriomas	16273235	CNVD
Breast cancer	21858162	CNVD
Ovarian cancer	21720365	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17142309	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Autism	22102821	CNVD
Gastric cancer	18160780	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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