Variant report

Variant	nsv978473
Chromosome Location	chr17:16644356-16649044
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 159 )

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4094443	chr17:16645067-16645068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs531843059	chr17:16645102-16645103	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs552026862	chr17:16645105-16645106	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs2621542	chr17:16645141-16645142	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs113461815	chr17:16645191-16645192	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs199836987	chr17:16645195-16645196	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs528259261	chr17:16648210-16648211	Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
8	rs4034562	chr17:16648217-16648218	Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
9	rs4034563	chr17:16648221-16648222	Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
10	rs149240058	chr17:16648233-16648234	Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
11	rs374124286	chr17:16648247-16648248	Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
12	rs2621534	chr17:16648282-16648283	Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
13	rs4034565	chr17:16648287-16648288	Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
14	rs563453081	chr17:16648295-16648296	Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
15	rs536963472	chr17:16648320-16648321	Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
16	rs2260298	chr17:16648341-16648342	Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
17	rs2349270	chr17:16648345-16648346	Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
18	rs1847577	chr17:16648350-16648351	Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
19	rs184106405	chr17:16648355-16648356	Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
20	rs559085048	chr17:16648376-16648377	Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
21	rs564036835	chr17:16648856-16648857	Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs576759110	chr17:16648862-16648863	Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs545431254	chr17:16648882-16648883	Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs558981208	chr17:16648890-16648891	Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs528173289	chr17:16648919-16648920	Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs201163615	chr17:16648978-16648979	Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs541592457	chr17:16648999-16649000	Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs561530952	chr17:16649011-16649012	Active TSS Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
29	rs144648733	chr17:16649032-16649033	Active TSS Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:159)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Esophageal adenocarcinoma	18519675	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Chordoma	21602918	CNVD
Miller-Dieker syndrome	22283845	CNVD
Non-syndromic sensorineural hearing loss	17457615	CNVD
Cancer	22429812	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Ewing''s sarcoma	21437220	CNVD
Follicular lymphoma	19010834	CNVD
Colorectal cancer	20709793	CNVD
Acute myeloid leukemia	16864856	CNVD
Endometrial cancer	22040021	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Breast cancer	22028636	CNVD
Breast cancer	20837533	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
colon cancer	17210682	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Chronic lymphocytic leukemia	17971485	CNVD
Basal cell lymphoma	17170743	CNVD
Breast cancer	16461572	CNVD
Colorectal cancer	16272173	CNVD
Follicular lymphoma	17170743	CNVD
Human rectal carcinomas	16397240	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Ovarian cancer	22174824	CNVD
Moyamoya disease	22323933	CNVD
small cell lung cancer	20016488	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Myelodysplastic syndrome	21251322	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20724749	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Acute myeloid leukemia	17237825	CNVD
Colorectal cancer	21645411	CNVD
HIV/AIDS	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
HIV/AIDS	17953491	CNVD
HIV/AIDS	20877625	CNVD
Immune disease	21076436	CNVD
Rheumatoid arthritis	17953491	CNVD
Type 1 diabetes	17953491	CNVD
HIV/AIDS	15637236	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Ovarian cancer	21781307	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Neurofibromatosis	18196300	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Colorectal cancer	16774939	CNVD
Pancreatic cancer	21811587	CNVD
Breast cancer	17001317	CNVD
Rhabdomyosarcoma	16790082	CNVD
Charcot-marie-tooth disease	16463004	CNVD
Osteosarcoma	22292074	CNVD
Breast cancer	17603634	CNVD
Charcot	16760730	CNVD
Mental retardation	17901693	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
ovarian endometriomas	16273235	CNVD
Ovarian cancer	21720365	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Gastric cancer	18160780	CNVD
Smith-Magenis syndrome	18923513	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Austim spectrum disorder	21302340	CNVD
Autism	22492990	CNVD
Congenital abnormalities	21549014	CNVD
Developmental delay	18414209	CNVD
Developmental delay	21549014	CNVD
Epilepsy	20970697	CNVD
Mental retardation	18414209	CNVD
Mental retardation	21549014	CNVD
Smith-Magenis syndrome	21981782	CNVD
Smith-Magenis syndrome	20188345	CNVD
Smith-Magenis syndrome	16775514	CNVD
Smith-Magenis syndrome	22585170	CNVD
Smith-Magenis syndrome	22241247	CNVD
Autism	20970697	CNVD
Mental retardation	19951919	CNVD
Potocki-Lupski syndrome	21271655	CNVD
Potocki-lupski syndrome	17357070	CNVD
Potocki-lupski syndrome	20110824	CNVD
Potocki-lupski syndrome	18923514	CNVD
Potocki-lupski syndrome	22241247	CNVD
Potocki-lupski syndrome	20188345	CNVD
Schizophrenia	21399695	CNVD
Mental retardation	16773131	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Charcot-marie-tooth disease	22470819	CNVD
Neurofibromatosis	22470819	CNVD
Neuropathy	22470819	CNVD
Smith-Magenis syndrome	18301319	CNVD
Smith-Magenis syndrome	17357070	CNVD
Smith-Magenis syndrome	18469339	CNVD
Smith-Magenis syndrome	22241097	CNVD
Smith-Magenis syndrome	22470819	CNVD
Tourette syndrome	18923514	CNVD
Type 1 diabetes	22470819	CNVD
Potocki-lupski syndrome	18469339	CNVD
Follicular lymphoma	20505157	CNVD
T-cell lymphomas	19863542	CNVD
Neuropathy	17597781	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	17015230	CNVD
Smith-Magenis syndrome	17597781	CNVD
Potocki-lupski syndrome	18059269	CNVD
Potocki-lupski syndrome	17597781	CNVD
Mental retardation	17847001	CNVD
Multiple myeloma	16616336	CNVD
Breast cancer	20409316	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16645000-16645200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr17:16648200-16648400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
3	chr17:16648800-16649600	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr17:16649000-16649400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr17:16649000-16649400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:16649000-16649400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr17:16649000-16649400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr17:16649000-16649600	Active TSS	H1 Cell Line	embryonic stem cell
9	chr17:16649000-16649600	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr17:16649000-16649600	Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr17:16649000-16649800	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr17:16649000-16650000	Active TSS	H9 Cell Line	embryonic stem cell
13	chr17:16649000-16650000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

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