Variant report

Variant	nsv978792
Chromosome Location	chr19:22582007-22586414
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 190 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:190 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569480569	chr19:22582013-22582014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs116583417	chr19:22582019-22582020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs148509488	chr19:22582043-22582044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs567072896	chr19:22582063-22582064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs370508079	chr19:22582079-22582080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs187518825	chr19:22582161-22582162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs553119947	chr19:22582181-22582182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs190471430	chr19:22582187-22582188	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs538290475	chr19:22582310-22582311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs397834849	chr19:22582313-22582314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs72481612	chr19:22582331-22582332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs397834850	chr19:22582336-22582337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs575497800	chr19:22582374-22582375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs536551174	chr19:22582394-22582395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs554304751	chr19:22582395-22582396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs564432448	chr19:22582429-22582430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs572717739	chr19:22582439-22582440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs540304382	chr19:22582480-22582481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs182998110	chr19:22582496-22582497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs577150555	chr19:22582552-22582553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs559347166	chr19:22582618-22582619	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs544318545	chr19:22582655-22582656	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs530579183	chr19:22582699-22582700	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs377564075	chr19:22582709-22582710	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs574098407	chr19:22582722-22582723	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs144111264	chr19:22582730-22582731	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs117600560	chr19:22582759-22582760	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs188075119	chr19:22582775-22582776	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs560633790	chr19:22582795-22582796	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs527910271	chr19:22582862-22582863	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs546695523	chr19:22582870-22582871	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs193057759	chr19:22582872-22582873	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs538625264	chr19:22582880-22582881	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs149695069	chr19:22582923-22582924	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs10420149	chr19:22582925-22582926	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
36	rs568844802	chr19:22582928-22582929	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs536109969	chr19:22582933-22582934	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs184536699	chr19:22582967-22582968	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs146906559	chr19:22582970-22582971	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs59599162	chr19:22582971-22582972	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs572683033	chr19:22583003-22583004	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs368401350	chr19:22583012-22583013	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs76334610	chr19:22583013-22583014	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs2885219	chr19:22583057-22583058	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs577311132	chr19:22583096-22583097	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs544695061	chr19:22583106-22583107	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs374873644	chr19:22583124-22583125	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs562698612	chr19:22583183-22583184	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs187508071	chr19:22583201-22583202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs192917219	chr19:22583215-22583216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:22579600-22582600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:22582600-22583000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:22582800-22583200	ZNF genes & repeats	Ovary	ovary
4	chr19:22583200-22588600	Weak transcription	Ovary	ovary

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