Variant report

Variant	nsv978793
Chromosome Location	chr19:22640161-22641087
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr19:22640425-22640450	GM13976	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF98-5	chr19:22640608-22641014	NONHSAT063790
2	lnc-ZNF98-5	chr19:22640131-22640292	NONHSAT063790

Variant related genes	Relation type
ENSG00000268717	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 44 )

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs79446491	chr19:22640183-22640184	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs147471283	chr19:22640186-22640187	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs186751993	chr19:22640194-22640195	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs190164303	chr19:22640229-22640230	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs565565340	chr19:22640232-22640233	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs532365458	chr19:22640257-22640258	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs532631039	chr19:22640259-22640260	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs183159183	chr19:22640282-22640283	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs536700587	chr19:22640707-22640708	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs555045485	chr19:22640716-22640717	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs573198837	chr19:22640721-22640722	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs188736230	chr19:22640722-22640723	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs1230302	chr19:22640737-22640738	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs192803873	chr19:22640760-22640761	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs112330643	chr19:22640821-22640822	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
16	rs187142922	chr19:22640895-22640896	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
17	rs530227539	chr19:22640943-22640944	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
18	rs1230303	chr19:22640958-22640959	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
19	rs150807423	chr19:22640969-22640970	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
20	rs530321728	chr19:22640978-22640979	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
21	rs57095989	chr19:22640990-22640991	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
22	rs10419171	chr19:22640996-22640997	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs546545078	chr19:22641005-22641006	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
24	rs201626637	chr19:22641021-22641022	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs527301955	chr19:22641075-22641076	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:44)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Breast cancer	22522925	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:22640800-22642200	ZNF genes & repeats	Pancreas	Pancrea
2	chr19:22640800-22643800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr19:22641000-22642200	ZNF genes & repeats	Aorta	Aorta

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