Variant report
| Variant | nsv979424 |
|---|---|
| Chromosome Location | chr20:26238358-26243410 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs200711392 | chr20:26241612-26241613 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs372527157 | chr20:26241648-26241649 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs543919994 | chr20:26241655-26241656 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs369709088 | chr20:26241658-26241659 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs201688492 | chr20:26241669-26241670 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs192292797 | chr20:26241689-26241690 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs75035052 | chr20:26241695-26241696 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs200207232 | chr20:26241729-26241730 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs372768617 | chr20:26241730-26241731 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs183662484 | chr20:26241764-26241765 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs188719580 | chr20:26241775-26241776 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs75916235 | chr20:26241799-26241800 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs6076408 | chr20:26241802-26241803 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs369278953 | chr20:26241805-26241806 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs528327935 | chr20:26241813-26241814 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs368877440 | chr20:26241823-26241824 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs34960068 | chr20:26241824-26241825 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs6084091 | chr20:26241837-26241838 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs371271827 | chr20:26241845-26241846 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs200806811 | chr20:26241881-26241882 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs58977069 | chr20:26241902-26241903 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs200789275 | chr20:26241903-26241904 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs75294811 | chr20:26241904-26241905 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs78029345 | chr20:26241930-26241931 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 25 | rs201215595 | chr20:26241941-26241942 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 26 | rs75884293 | chr20:26241960-26241961 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs570875644 | chr20:26241985-26241986 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:42)
| Disease | PMID | Source |
|---|---|---|
| Cancer | 21637783 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Oral cancer | 19627613 | CNVD |
| colon cancer | 17210682 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Cancer | 16751803 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| Human rectal carcinomas | 16397240 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Central neurocytomas | 17123091 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Colorectal cancer | 21645411 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Autism | 22495311 | CNVD |
| Anaplastic large cell lymphoma | 18179710 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Cancer | 21183584 | CNVD |
| Myxofibrosarcoma | 16751306 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Chordoma | 18071362 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Colorectal cancer | 16774939 | CNVD |
| Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
| Medulloblastoma | 21163964 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:26241600-26242000 | Enhancers | Dnd41 | blood |
