Variant report
| Variant | nsv979426 |
|---|---|
| Chromosome Location | chr20:29964176-29965111 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:3)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:29960399..29962900-chr20:29964371..29965877,2 | MCF-7 | breast: |
(count:3 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-DEFB119-1 | chr20:29964966-29965165 | NONHSAT079290 |
| 2 | lnc-DEFB119-1 | chr20:29964966-29965242 | NONHSAT079289 |
| 3 | lnc-DEFB119-1 | chr20:29964966-29965242 | NR_073153 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs141914877 | chr20:29964977-29964978 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs115355226 | chr20:29964988-29964989 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs376756000 | chr20:29964998-29964999 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs6120000 | chr20:29965006-29965007 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 5 | rs709045 | chr20:29965014-29965015 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
| 6 | rs530788920 | chr20:29965039-29965040 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 7 | rs372151570 | chr20:29965043-29965044 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 8 | rs141841649 | chr20:29965054-29965055 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 9 | rs550542493 | chr20:29965068-29965069 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 10 | rs567485409 | chr20:29965106-29965107 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 11 | rs150604485 | chr20:29965110-29965111 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:65)
| Disease | PMID | Source |
|---|---|---|
| Gastric cancer | 17908304 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Colorectal cancer | 21645411 | CNVD |
| Autism | 22495311 | CNVD |
| Anaplastic large cell lymphoma | 18179710 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Chordoma | 18071362 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Breast cancer | 21806811 | CNVD |
| Melanoma | 21693616 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| colon cancer | 17210682 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Breast cancer | 22028636 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Myeloproliferative neoplasm | 20015882 | CNVD |
| Soft tissue tumor | 16732325 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Gastric cancer | 17167181 | CNVD |
| Myeloproliferative neoplasm | 19047681 | CNVD |
| Breast cancer | 17899364 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Human rectal carcinomas | 16397240 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Bladder cancer | 21909424 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| Cutaneous T-cell lymphoma | 21881587 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Colorectal cancer | 22860045 | CNVD |
| Ovarian cancer | 20844748 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Melanoma | 18172304 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
| Breast cancer | 21364760 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| early-passage human iPS cells | 21368824 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Gastric cancer | 16891809 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Ovarian clear cell carcinoma | 21343371 | CNVD |
| Breast cancer | 21509527 | CNVD |
| Breast cancer | 22522925 | CNVD |
Chromatin state (count:0 , 50 per page) page:
| No data |
