Variant report

Variant	nsv979777
Chromosome Location	chr3:102087816-102091515
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:119 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs564944878	chr3:102087818-102087819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs139192808	chr3:102087858-102087859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs551433344	chr3:102087883-102087884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs566635378	chr3:102087993-102087994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs73157660	chr3:102087996-102087997	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs551497911	chr3:102088097-102088098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs566386584	chr3:102088131-102088132	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs549213369	chr3:102088231-102088232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs369702345	chr3:102088257-102088258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs144058175	chr3:102088395-102088396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs145975641	chr3:102088448-102088449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs546755211	chr3:102088462-102088463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs571204883	chr3:102088487-102088488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs79071695	chr3:102088496-102088497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs554203790	chr3:102088514-102088515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs527242931	chr3:102088537-102088538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs572715060	chr3:102088538-102088539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs542786526	chr3:102088541-102088542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs549414908	chr3:102088546-102088547	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs139549743	chr3:102088561-102088562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs562839867	chr3:102088597-102088598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs183863296	chr3:102088671-102088672	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs186681722	chr3:102088731-102088732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs565279231	chr3:102088750-102088751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs567920169	chr3:102088752-102088753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs192140330	chr3:102088834-102088835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs149721034	chr3:102088835-102088836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs545270570	chr3:102088853-102088854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs560151161	chr3:102088896-102088897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs576518238	chr3:102088900-102088901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs116249864	chr3:102088944-102088945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs549160433	chr3:102088954-102088955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs1435206	chr3:102089007-102089008	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs531433424	chr3:102089016-102089017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs556371235	chr3:102089028-102089029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs549933121	chr3:102089052-102089053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs76294422	chr3:102089054-102089055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs190537896	chr3:102089117-102089118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs1435205	chr3:102089118-102089119	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs182321711	chr3:102089152-102089153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs544750376	chr3:102089190-102089191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs538791403	chr3:102089221-102089222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs536556638	chr3:102089237-102089238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs368696560	chr3:102089242-102089243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs145592737	chr3:102089290-102089291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs184640897	chr3:102089291-102089292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs537126666	chr3:102089307-102089308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs558815309	chr3:102089331-102089332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs201146175	chr3:102089347-102089348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs34204615	chr3:102089354-102089355	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Neurodevelopmental disorder	22521361	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	16608533	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102075600-102096600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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