Variant report

Variant	nsv979788
Chromosome Location	chr3:158195958-158198540
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:158193823..158196386-chr3:158204544..158206278,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 50 )

Variant overlapped rSNPs/rCNVs (count:67 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs142612741	chr3:158195974-158195975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs150996295	chr3:158195997-158195998	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs200538118	chr3:158196024-158196025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs555299553	chr3:158196091-158196092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs547280496	chr3:158196110-158196111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs9854620	chr3:158196128-158196129	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
7	rs116198573	chr3:158196307-158196308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs556473440	chr3:158196309-158196310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs567172378	chr3:158196311-158196312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs111907945	chr3:158196319-158196320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs190255913	chr3:158196326-158196327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs5853827	chr3:158196338-158196339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs35267972	chr3:158196339-158196340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs60377198	chr3:158196341-158196342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs558303005	chr3:158196349-158196350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs573328473	chr3:158196454-158196455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs540277518	chr3:158196477-158196478	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs539335212	chr3:158196530-158196531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs529267319	chr3:158196622-158196623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs145900221	chr3:158196633-158196634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs1714514	chr3:158196659-158196660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs370638375	chr3:158196702-158196703	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs182567813	chr3:158196709-158196710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs60403804	chr3:158196737-158196738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs10603914	chr3:158196738-158196739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs533931472	chr3:158196739-158196740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs551532736	chr3:158196836-158196837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs6762774	chr3:158197023-158197024	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
29	rs199864354	chr3:158197047-158197048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs1656358	chr3:158197078-158197079	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs186850292	chr3:158197090-158197091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs567302949	chr3:158197124-158197125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs570837237	chr3:158197143-158197144	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs34620547	chr3:158197199-158197200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs191565521	chr3:158197260-158197261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs556510316	chr3:158197324-158197325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs571536428	chr3:158197351-158197352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs538837484	chr3:158197378-158197379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs538277227	chr3:158197486-158197487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs182491495	chr3:158197494-158197495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs35900404	chr3:158197547-158197548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs116562668	chr3:158197556-158197557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs534348979	chr3:158197560-158197561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs138739453	chr3:158197610-158197611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs62289516	chr3:158197614-158197615	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs141074005	chr3:158197623-158197624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs562864551	chr3:158197686-158197687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs150299565	chr3:158197718-158197719	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs545209751	chr3:158197776-158197777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs189246344	chr3:158197882-158197883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:50)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Hepatocellular carcinoma	16750200	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Basal cell lymphoma	17170743	CNVD
Breast cancer	16608533	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-small cell lung cancer	19010865	CNVD
abnormal development	18461090	CNVD
Prostate cancer	18632612	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16547154	CNVD
Breast cancer	21364760	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158190200-158201000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:158194000-158203800	Weak transcription	Fetal Heart	heart

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