Variant report

Variant	nsv979854
Chromosome Location	chr3:90303398-90311144
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr3:90306917-90306971	GM20000	blood:	n/a	n/a
2	FOS	chr3:90303902-90304118	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr3:90306908-90307076	ProgFib	skin:	n/a	n/a
4	POLR2A	chr3:90308387-90308468	Gliobla	brain:	n/a	n/a
5	SPI1	chr3:90305168-90305398	HL-60	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CGGBP1-4	chr3:90310564-90310858	NONHSAT090715

Variant related genes	Relation type
PROSP	TF binding region
HSPE1P19	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs193104073	chr3:90306936-90306937	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs377321921	chr3:90306942-90306943	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs62277732	chr3:90306975-90306976	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs185488866	chr3:90306988-90306989	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs554570945	chr3:90306994-90306995	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs140721207	chr3:90307031-90307032	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs9682723	chr3:90307036-90307037	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs533626808	chr3:90307047-90307048	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs547103667	chr3:90308393-90308394	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs539715226	chr3:90308397-90308398	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs141196559	chr3:90308423-90308424	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs542859269	chr3:90308428-90308429	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs559582138	chr3:90308450-90308451	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs370354771	chr3:90308451-90308452	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs150756963	chr3:90308454-90308455	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs150337936	chr3:90310612-90310613	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs544769971	chr3:90310613-90310614	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs551224550	chr3:90310618-90310619	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs565040263	chr3:90310686-90310687	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs138135355	chr3:90310695-90310696	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs569418704	chr3:90310701-90310702	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs187317445	chr3:90310706-90310707	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs552048963	chr3:90310709-90310710	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs560815475	chr3:90310712-90310713	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs77001902	chr3:90310715-90310716	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs570355633	chr3:90310754-90310755	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs546519014	chr3:90310781-90310782	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs79945446	chr3:90310795-90310796	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs77628053	chr3:90310801-90310802	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs79602726	chr3:90310809-90310810	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs560104837	chr3:90310810-90310811	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs532415613	chr3:90310836-90310837	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Soft tissue tumor	16732325	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Lung cancer	19547694	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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