Variant report
Variant | nsv979869 |
---|---|
Chromosome Location | chr3:121044012-121045664 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs540080876 | chr3:121044024-121044025 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs186800873 | chr3:121044033-121044034 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs532503392 | chr3:121044042-121044043 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs548581400 | chr3:121044073-121044074 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs533704208 | chr3:121044103-121044104 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs189677492 | chr3:121044104-121044105 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs181277448 | chr3:121044131-121044132 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs531758746 | chr3:121044169-121044170 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs533861622 | chr3:121044260-121044261 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs185633473 | chr3:121044271-121044272 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs568674214 | chr3:121044298-121044299 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs527988425 | chr3:121044338-121044339 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs548010275 | chr3:121044340-121044341 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs61796933 | chr3:121044390-121044391 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
15 | rs549848620 | chr3:121044413-121044414 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs189657685 | chr3:121044463-121044464 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs145014088 | chr3:121044526-121044527 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs568839106 | chr3:121044638-121044639 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs142149438 | chr3:121044645-121044646 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs554137084 | chr3:121044658-121044659 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs574441773 | chr3:121044662-121044663 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs376070833 | chr3:121044710-121044711 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs368552033 | chr3:121044723-121044724 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs553560715 | chr3:121044731-121044732 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs182295870 | chr3:121044805-121044806 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs569725129 | chr3:121044828-121044829 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs567066226 | chr3:121044832-121044833 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs546004867 | chr3:121044839-121044840 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs553855742 | chr3:121044846-121044847 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs201483208 | chr3:121044847-121044848 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs370423111 | chr3:121044943-121044944 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs538725919 | chr3:121044958-121044959 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs186117444 | chr3:121044981-121044982 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs372616388 | chr3:121045023-121045024 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs207463675 | chr3:121045027-121045028 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs554072064 | chr3:121045052-121045053 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs191990935 | chr3:121045069-121045070 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs113565821 | chr3:121045111-121045112 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs372402909 | chr3:121045141-121045142 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs562015300 | chr3:121045144-121045145 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs183472323 | chr3:121045145-121045146 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs558630514 | chr3:121045146-121045147 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs78955622 | chr3:121045174-121045175 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs376879172 | chr3:121045196-121045197 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs533603603 | chr3:121045276-121045277 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs550092214 | chr3:121045295-121045296 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs568974587 | chr3:121045303-121045304 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs537544613 | chr3:121045438-121045439 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs147795615 | chr3:121045463-121045464 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs188364513 | chr3:121045472-121045473 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Basal cell lymphoma | 17053054 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Uveal melanoma | 21693616 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Retinoblastoma | 21504564 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Lung cancer | 18438408 | CNVD |
Cancer | 21183584 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Bipolar disorder | 20877625 | CNVD |
Bipolar disorder | 21956041 | CNVD |
Bipolar disorder | 22241247 | CNVD |
Biliary cancer | 18923514 | CNVD |
Prostate cancer | 21965145 | CNVD |
Cancer | 21129771 | CNVD |
Congenital diaphragmatic hernia | 21085971 | CNVD |
Cervical cancer | 21062161 | CNVD |
Squamous cell cancer | 20885788 | CNVD |
Melanoma | 18172304 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Bipolar disorder | 18458673 | CNVD |
Breast cancer | 22032731 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Breast cancer | 16461572 | CNVD |
Neuroblastoma | 17533364 | CNVD |
microdeletion syndrome | 22180640 | CNVD |
Cervical Cancer | 21857958 | CNVD |
Melanoma | 21693616 | CNVD |
Lung cancer | 21426551 | CNVD |
Cancer | 21637783 | CNVD |
Cervical cancer | 21063398 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Liposarcoma | 21253554 | CNVD |
Oral cancer | 21386901 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
Cancer | 22065749 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Breast cancer | 16608533 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Developmental delay | 22180640 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Basal cell lymphoma | 21115979 | CNVD |
Ovarian cancer | 22174824 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
small cell lung cancer | 20016488 | CNVD |
T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Autism | 22241247 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Bipolar disorder | 17953491 | CNVD |
Lung cancer | 20668451 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Breast cancer | 22522925 | CNVD |
Congenital anomalies of the kidney and urinary tract | 18316590 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:121033600-121052200 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
2 | chr3:121043200-121049000 | Weak transcription | Ovary | ovary |