Variant report

Variant	nsv980019
Chromosome Location	chr3:102806064-102828476
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZPLD1-2	chr3:102817066-102817185	XLOC_002743

Variant related genes	Relation type
HOXA9	miRNA target sites

Extended variants
information (count: 70 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:70 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs570540007	chr3:102806087-102806088	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs549684098	chr3:102806139-102806140	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs546486459	chr3:102806220-102806221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs138942713	chr3:102806229-102806230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs193028671	chr3:102806275-102806276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs368574090	chr3:102806306-102806307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs142177320	chr3:102806376-102806377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs570105730	chr3:102806389-102806390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs116122999	chr3:102806427-102806428	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs559041641	chr3:102806439-102806440	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs577502201	chr3:102806446-102806447	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs541690382	chr3:102806546-102806547	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs553654072	chr3:102806547-102806548	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs6767265	chr3:102806604-102806605	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs541784212	chr3:102806610-102806611	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs77752114	chr3:102806611-102806612	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs145887776	chr3:102806619-102806620	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs185618767	chr3:102806620-102806621	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs138351490	chr3:102806641-102806642	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs530447326	chr3:102806658-102806659	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs563886993	chr3:102806674-102806675	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs189035814	chr3:102806733-102806734	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs149643375	chr3:102806745-102806746	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs567980299	chr3:102806755-102806756	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs529195320	chr3:102806770-102806771	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs550878856	chr3:102806775-102806776	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs111603488	chr3:102806819-102806820	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs144425110	chr3:102806857-102806858	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs371822464	chr3:102806862-102806863	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs181542061	chr3:102807003-102807004	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs558776469	chr3:102807042-102807043	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs570958917	chr3:102807045-102807046	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs535198347	chr3:102807061-102807062	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs553627669	chr3:102807070-102807071	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs386664025	chr3:102807096-102807097	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs62270523	chr3:102807097-102807098	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs557676823	chr3:102807104-102807105	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs575129849	chr3:102807129-102807130	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs185641465	chr3:102807141-102807142	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs563798950	chr3:102807146-102807147	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs576714662	chr3:102817069-102817070	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs541029593	chr3:102817071-102817072	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs144278660	chr3:102817116-102817117	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs539045293	chr3:102817159-102817160	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs184103672	chr3:102817160-102817161	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs539545767	chr3:102824439-102824440	Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs577474172	chr3:102824444-102824445	Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs557655728	chr3:102824456-102824457	Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs113124017	chr3:102824457-102824458	Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs534079733	chr3:102824459-102824460	Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Neurodevelopmental disorder	22521361	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
microdeletion syndrome	22180640	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	16608533	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17431168	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102805400-102806400	Weak transcription	Fetal Intestine Large	intestine
2	chr3:102805400-102806400	Weak transcription	Fetal Intestine Small	intestine
3	chr3:102805800-102806200	Enhancers	Hela-S3	cervix
4	chr3:102806400-102807200	Enhancers	Fetal Intestine Large	intestine
5	chr3:102806600-102806800	Enhancers	Fetal Intestine Small	intestine
6	chr3:102824400-102825000	Active TSS	Fetal Intestine Large	intestine

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