Variant report
Variant | nsv980254 |
---|---|
Chromosome Location | chr4:120804285-120811932 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:120798744..120800774-chr4:120802399..120804949,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs531271969 | chr4:120808452-120808453 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs551084115 | chr4:120808556-120808557 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs570865415 | chr4:120808562-120808563 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs533553921 | chr4:120808685-120808686 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs553397217 | chr4:120808714-120808715 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs557934401 | chr4:120808729-120808730 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs567840893 | chr4:120808743-120808744 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs186034208 | chr4:120808770-120808771 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs540534757 | chr4:120808776-120808777 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs190495818 | chr4:120808810-120808811 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs183264208 | chr4:120808852-120808853 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs545468581 | chr4:120808937-120808938 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs559101488 | chr4:120808943-120808944 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs4432732 | chr4:120808966-120808967 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
15 | rs541434836 | chr4:120809006-120809007 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs561364944 | chr4:120809039-120809040 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs529161136 | chr4:120809047-120809048 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs573656004 | chr4:120809067-120809068 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs542690025 | chr4:120809068-120809069 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs542926321 | chr4:120809096-120809097 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs574018766 | chr4:120809099-120809100 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs562516189 | chr4:120809112-120809113 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs531406254 | chr4:120809128-120809129 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs551022855 | chr4:120809161-120809162 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs571004891 | chr4:120809166-120809167 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs529630018 | chr4:120809198-120809199 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs370740140 | chr4:120809264-120809265 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs547061784 | chr4:120809282-120809283 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs567270091 | chr4:120809293-120809294 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs112633386 | chr4:120809319-120809320 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs556817563 | chr4:120809337-120809338 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs79931710 | chr4:120809348-120809349 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs72684533 | chr4:120809352-120809353 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
34 | rs371364072 | chr4:120809391-120809392 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs1587734 | chr4:120809455-120809456 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
36 | rs73842752 | chr4:120809486-120809487 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
37 | rs541575607 | chr4:120809527-120809528 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs554634851 | chr4:120809550-120809551 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs189767704 | chr4:120809562-120809563 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs574798412 | chr4:120809571-120809572 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs561071950 | chr4:120809572-120809573 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs542511194 | chr4:120809598-120809599 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs78239694 | chr4:120809618-120809619 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs62319730 | chr4:120809679-120809680 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs377340083 | chr4:120809689-120809690 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs531542956 | chr4:120809699-120809700 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs182689436 | chr4:120809744-120809745 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs564771838 | chr4:120809750-120809751 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs565494303 | chr4:120809779-120809780 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs1587735 | chr4:120809786-120809787 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
Disease | PMID | Source |
---|---|---|
Acute lymphoblastic leukemia | 22237106 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Chordoma | 21602918 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 21858162 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Gastric cancer | 21586687 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Melanoma | 18172304 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Breast cancer | 17603634 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Breast cancer | 16272173 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Malignant mesothelioma | 18160781 | CNVD |
Medulloblastoma | 18056178 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Pleural malignant mesothelioma | 18160781 | CNVD |
Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
4q-syndrome | 17576883 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Muscular dystrophy | 21149563 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Liposarcoma | 21253554 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Cervical cancer | 21062161 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Breast cancer | 16608533 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
Lung cancer | 19208797 | CNVD |
Wilms tumour | 21544195 | CNVD |
Breast cancer | 21785460 | CNVD |
Myelodysplastic syndrome | 21251322 | CNVD |
Lung cancer | 18438408 | CNVD |
Cancer | 22429812 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Cancer | 21183584 | CNVD |
primary effusion lymphomas | 17116491 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Breast cancer | 17133270 | CNVD |
Colorectal cancer | 20459617 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Congenital anomalies of the kidney and urinary tract | 20505237 | CNVD |
Breast cancer | 17393978 | CNVD |
Esophageal cancer | 21851588 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Neuroblastoma | 21899760 | CNVD |
Renal cell carcinoma | 18194544 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Myelodysplastic syndrome | 18508791 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Clear cell renal cell carcinoma | 18791270 | CNVD |
Acute myeloid leukemia | 19651601 | CNVD |
Gastric cancer | 16891809 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:120808400-120811200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
2 | chr4:120811200-120812000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |