Variant report

Variant	nsv980257
Chromosome Location	chr4:132592669-132640081
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 377 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:377 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs190457984	chr4:132601601-132601602	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs370730740	chr4:132601665-132601666	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs570533540	chr4:132601690-132601691	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs376315412	chr4:132601691-132601692	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs532852110	chr4:132601693-132601694	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs6858369	chr4:132601698-132601699	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs377515760	chr4:132601701-132601702	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs569490828	chr4:132601786-132601787	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs535393113	chr4:132601797-132601798	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs112377039	chr4:132601818-132601819	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs553138517	chr4:132601827-132601828	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs370991287	chr4:132601843-132601844	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs560470481	chr4:132601849-132601850	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs372087815	chr4:132601863-132601864	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs372151420	chr4:132601946-132601947	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs10001908	chr4:132601951-132601952	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs375511707	chr4:132601966-132601967	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs368304360	chr4:132601975-132601976	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs112446941	chr4:132601977-132601978	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs535026834	chr4:132601979-132601980	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs557832335	chr4:132602005-132602006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs573960540	chr4:132602025-132602026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs200535175	chr4:132602049-132602050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs542874306	chr4:132602054-132602055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs202059395	chr4:132602065-132602066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs578065765	chr4:132602072-132602073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs543531276	chr4:132602096-132602097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs369326965	chr4:132602097-132602098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs9985973	chr4:132602123-132602124	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs574276771	chr4:132602139-132602140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs144592317	chr4:132602141-132602142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs374156577	chr4:132602147-132602148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs543391807	chr4:132602157-132602158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs138586114	chr4:132602183-132602184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs112123791	chr4:132602196-132602197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs139019885	chr4:132602202-132602203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs573414488	chr4:132602220-132602221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs78067089	chr4:132602256-132602257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs185813476	chr4:132602266-132602267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs77762613	chr4:132602301-132602302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs113481468	chr4:132602302-132602303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs2202039	chr4:132602303-132602304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs2863478	chr4:132602346-132602347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs549448557	chr4:132602380-132602381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs563182811	chr4:132602385-132602386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs2863479	chr4:132602409-132602410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs111827192	chr4:132602437-132602438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs142547524	chr4:132602442-132602443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs2863480	chr4:132602453-132602454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs72673663	chr4:132602476-132602477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Colorectal cancer	16272173	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Neuroblastoma	21899760	CNVD
Renal cell carcinoma	18194544	CNVD
Olfactory neuroblastoma	18408657	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20459617	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Mental retardation	17847001	CNVD
Myelofibrosis	22110671	CNVD
Autism	18923514	CNVD
Autism	22241247	CNVD
Mental retardation	17901693	CNVD
small cell lung cancer	20016488	CNVD
Anaplastic thyroid cancer	18753363	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Autism	19492091	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:132601600-132602000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:132602000-132604800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:132604800-132605200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:132605000-132605200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:132622000-132622800	ZNF genes & repeats	Pancreas	Pancrea
6	chr4:132622000-132623000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
7	chr4:132628200-132629000	Enhancers	Dnd41	blood
8	chr4:132629000-132629400	Flanking Active TSS	Dnd41	blood
9	chr4:132629400-132629800	Enhancers	Dnd41	blood

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