Variant report
| Variant | nsv980409 |
|---|---|
| Chromosome Location | chr4:131795427-131803830 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RP11-62N21.1.1-7 | chr4:131802182-131802502 | XLOC_004076 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| PODN | miRNA target sites |
Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs575463153 | chr4:131802215-131802216 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs544525996 | chr4:131802231-131802232 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs368151044 | chr4:131802238-131802239 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs10023162 | chr4:131802275-131802276 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 5 | rs565517473 | chr4:131802295-131802296 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 6 | rs113195863 | chr4:131802317-131802318 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 7 | rs540667783 | chr4:131802335-131802336 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 8 | rs145808339 | chr4:131802348-131802349 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 9 | rs35026951 | chr4:131802351-131802352 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 10 | rs560618763 | chr4:131802352-131802353 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 11 | rs532526720 | chr4:131802362-131802363 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 12 | rs552709599 | chr4:131802371-131802372 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 13 | rs17430282 | chr4:131802454-131802455 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 14 | rs147649474 | chr4:131802483-131802484 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 15 | rs548470208 | chr4:131802484-131802485 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 16 | rs568456593 | chr4:131802494-131802495 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 17 | rs187851305 | chr4:131802498-131802499 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:75)
| Disease | PMID | Source |
|---|---|---|
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Chordoma | 21602918 | CNVD |
| HIV/AIDS | 22032296 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Small bowel adenocarcinoma | 21586687 | CNVD |
| Gastric cancer | 21586687 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| Breast cancer | 16272173 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Malignant mesothelioma | 18160781 | CNVD |
| Medulloblastoma | 18056178 | CNVD |
| Multiple myeloma | 17077331 | CNVD |
| Pleural malignant mesothelioma | 18160781 | CNVD |
| Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| 4q-syndrome | 17576883 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Muscular dystrophy | 21149563 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Lung cancer | 19208797 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Cancer | 22429812 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Cancer | 21183584 | CNVD |
| primary effusion lymphomas | 17116491 | CNVD |
| Splenic marginal zone lymphoma | 21957467 | CNVD |
| Breast cancer | 17133270 | CNVD |
| High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Congenital anomalies of the kidney and urinary tract | 20505237 | CNVD |
| Breast cancer | 17393978 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Testicular germ cell tumor | 18059402 | CNVD |
| Ovarian cancer | 22174824 | CNVD |
| Neuroblastoma | 21899760 | CNVD |
| Renal cell carcinoma | 18194544 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Colorectal cancer | 20459617 | CNVD |
| Lung squamous cell carcinoma | 22363434 | CNVD |
| Mental retardation | 17847001 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Autism | 18923514 | CNVD |
| Autism | 22241247 | CNVD |
| Mental retardation | 17901693 | CNVD |
| Bipolar disorder | 19114987 | CNVD |
Chromatin state (count:0 , 50 per page) page:
| No data |
