Variant report
Variant | nsv980421 |
---|---|
Chromosome Location | chr4:27775291-27786766 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs183095541 | chr4:27776881-27776882 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs115426879 | chr4:27776882-27776883 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs187728430 | chr4:27776895-27776896 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs550312558 | chr4:27776930-27776931 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
5 | rs192290580 | chr4:27776948-27776949 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs183343253 | chr4:27776963-27776964 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
7 | rs556092032 | chr4:27776964-27776965 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs565718434 | chr4:27776968-27776969 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
9 | rs534585401 | chr4:27776971-27776972 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs557916305 | chr4:27776980-27776981 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs577639524 | chr4:27776985-27776986 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs543268080 | chr4:27776986-27776987 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs368847677 | chr4:27776992-27776993 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs573858188 | chr4:27777027-27777028 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs374211885 | chr4:27777068-27777069 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs542561552 | chr4:27777110-27777111 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs143634311 | chr4:27777141-27777142 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs148167843 | chr4:27777189-27777190 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs143547311 | chr4:27777213-27777214 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs540997573 | chr4:27777214-27777215 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs202030804 | chr4:27777217-27777218 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs6448537 | chr4:27777254-27777255 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
23 | rs6448538 | chr4:27777296-27777297 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
24 | rs550110401 | chr4:27777324-27777325 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
25 | rs559673138 | chr4:27777347-27777348 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
26 | rs78349462 | chr4:27777368-27777369 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
27 | rs188409015 | chr4:27777388-27777389 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
28 | rs554438012 | chr4:27781003-27781004 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
29 | rs75664181 | chr4:27781030-27781031 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
30 | rs12171363 | chr4:27781037-27781038 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
31 | rs191442682 | chr4:27781055-27781056 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs12171362 | chr4:27781059-27781060 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
33 | rs542046501 | chr4:27781146-27781147 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
34 | rs12171364 | chr4:27781151-27781152 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
35 | rs182798216 | chr4:27781160-27781161 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs541369233 | chr4:27781191-27781192 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs533670649 | chr4:27781245-27781246 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs57232242 | chr4:27781246-27781247 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
39 | rs138184572 | chr4:27781250-27781251 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs564383590 | chr4:27781251-27781252 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs397770841 | chr4:27781253-27781254 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs532422697 | chr4:27781254-27781255 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
43 | rs187116908 | chr4:27781267-27781268 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs191599313 | chr4:27781275-27781276 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs559935635 | chr4:27781277-27781278 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs531648848 | chr4:27781314-27781315 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs548275203 | chr4:27781329-27781330 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs113422321 | chr4:27781332-27781333 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs528982348 | chr4:27781361-27781362 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs147075420 | chr4:27781374-27781375 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Chronic lymphocytic leukemia | 21546498 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Neuroblastoma | 17533364 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Cancer | 21637783 | CNVD |
Melanoma | 21693616 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Cervical cancer | 21062161 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chordoma | 21602918 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Neuroblastoma | 18923191 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 21785460 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Lung cancer | 18438408 | CNVD |
Wilms tumour | 21544195 | CNVD |
Breast cancer | 21858162 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Cancer | 21183584 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Gastric cancer | 21586687 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 16608533 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Melanoma | 22183965 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Prostate cancer | 18632612 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Burkitt''s lymphoma | 20823134 | CNVD |
Cancer | 22183965 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Melanoma | 18172304 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Prostate cancer | 16573809 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:27776800-27777400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
2 | chr4:27781000-27781600 | Enhancers | HUES6 Cell Line | embryonic stem cell |
3 | chr4:27781200-27781600 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
4 | chr4:27781200-27782000 | Enhancers | HUES48 Cell Line | embryonic stem cell |
5 | chr4:27781200-27782800 | Enhancers | H9 Cell Line | embryonic stem cell |
6 | chr4:27781400-27782000 | Enhancers | HUES64 Cell Line | embryonic stem cell |
7 | chr4:27781600-27782000 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
8 | chr4:27782000-27782400 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
9 | chr4:27782000-27782400 | Enhancers | HUES6 Cell Line | embryonic stem cell |
10 | chr4:27782000-27782400 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
11 | chr4:27782400-27782800 | Enhancers | HUES48 Cell Line | embryonic stem cell |
12 | chr4:27782400-27782800 | Enhancers | HUES64 Cell Line | embryonic stem cell |