Variant report

Variant	nsv980563
Chromosome Location	chr5:52436848-52446366
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ITGA2-3	chr5:52445214-52446721	l_2918_chr5:52441399-52446721_testes
2	lnc-ITGA2-3	chr5:52441400-52441735	l_2918_chr5:52441399-52446721_testes
3	lnc-ITGA2-3	chr5:52443827-52445013	l_2918_chr5:52441399-52446721_testes

Extended variants
information (count: 113 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:113 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201819470	chr5:52441426-52441427	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs558552001	chr5:52441433-52441434	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs62357393	chr5:52441501-52441502	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs534657254	chr5:52441527-52441528	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs10056295	chr5:52441555-52441556	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs370831926	chr5:52441575-52441576	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs372839684	chr5:52441579-52441580	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs574537022	chr5:52441580-52441581	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs542141713	chr5:52441581-52441582	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs563413399	chr5:52441605-52441606	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs376617525	chr5:52441611-52441612	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs575167923	chr5:52441616-52441617	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs545809341	chr5:52441651-52441652	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs564100461	chr5:52441659-52441660	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs528568778	chr5:52441667-52441668	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs10058043	chr5:52441670-52441671	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs562350342	chr5:52441679-52441680	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs181136389	chr5:52441734-52441735	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs9292010	chr5:52443830-52443831	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
20	rs254606	chr5:52443843-52443844	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs535502368	chr5:52443846-52443847	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs542393543	chr5:52443889-52443890	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs578146357	chr5:52443895-52443896	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs539093387	chr5:52443904-52443905	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs192726521	chr5:52443907-52443908	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs572595762	chr5:52443980-52443981	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs542977762	chr5:52444006-52444007	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs1610877	chr5:52444019-52444020	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs34874233	chr5:52444020-52444021	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs386403769	chr5:52444022-52444023	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs36083710	chr5:52444023-52444024	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs548383941	chr5:52444025-52444026	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs561608842	chr5:52444030-52444031	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs566498693	chr5:52444063-52444064	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs254607	chr5:52444086-52444087	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs182785715	chr5:52444093-52444094	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs552553181	chr5:52444132-52444133	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs576290654	chr5:52444144-52444145	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs570740741	chr5:52444253-52444254	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs562106556	chr5:52444254-52444255	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs146232403	chr5:52444281-52444282	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs194218	chr5:52444292-52444293	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs556161537	chr5:52444407-52444408	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs139313337	chr5:52444454-52444455	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs548871659	chr5:52444465-52444466	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs567573352	chr5:52444466-52444467	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs254608	chr5:52444488-52444489	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs535157633	chr5:52444501-52444502	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs13359484	chr5:52444508-52444509	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs144136616	chr5:52444560-52444561	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Cancer	16751803	CNVD
Autism	22495311	CNVD
Intellectual disability	22102821	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	22032731	CNVD
Esophageal cancer	20955586	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
adenomatous polyposis	22470819	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Hepatocellular carcinoma	16750200	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21364760	CNVD
Oral cancer	21386901	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Bladder cancer	21909424	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Lung cancer	21911935	CNVD
Breast cancer	17133270	CNVD
Breast cancer	19602461	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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