Variant report

Variant	nsv980703
Chromosome Location	chr5:98907195-98917730
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RGMB-2	chr5:98913427-98913661	ENSG00000249515

Extended variants
information (count: 111 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:111 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs557452485	chr5:98913454-98913455	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs665942	chr5:98913489-98913490	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs575717244	chr5:98913504-98913505	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs149875449	chr5:98913541-98913542	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs200012286	chr5:98913542-98913543	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs542813222	chr5:98913551-98913552	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs554786927	chr5:98913584-98913585	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs557126763	chr5:98914411-98914412	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs569328839	chr5:98914428-98914429	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs73776535	chr5:98914441-98914442	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs554723540	chr5:98914445-98914446	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs573137466	chr5:98914547-98914548	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs540491499	chr5:98914573-98914574	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs376735556	chr5:98914577-98914578	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs182943903	chr5:98914608-98914609	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs576716838	chr5:98914639-98914640	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs112211034	chr5:98914647-98914648	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs562384178	chr5:98914671-98914672	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs529809604	chr5:98914707-98914708	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs541972788	chr5:98914722-98914723	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs560372167	chr5:98914735-98914736	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs527495707	chr5:98914772-98914773	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs113004886	chr5:98914799-98914800	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs552156976	chr5:98914807-98914808	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs570725975	chr5:98914833-98914834	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs531551213	chr5:98914836-98914837	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs550952481	chr5:98914838-98914839	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs138738442	chr5:98914872-98914873	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs2845993	chr5:98914927-98914928	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs548293239	chr5:98914940-98914941	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs566697475	chr5:98914947-98914948	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs534129045	chr5:98914952-98914953	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs558945126	chr5:98914953-98914954	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs185825358	chr5:98914957-98914958	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs536840722	chr5:98914999-98915000	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs2845994	chr5:98915016-98915017	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs139893366	chr5:98915039-98915040	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs541911194	chr5:98915062-98915063	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs560308926	chr5:98915157-98915158	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs190250085	chr5:98915202-98915203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs2548095	chr5:98915203-98915204	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs182463006	chr5:98915207-98915208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs78621432	chr5:98915221-98915222	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs115799638	chr5:98915225-98915226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs549844006	chr5:98915249-98915250	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs562511589	chr5:98915258-98915259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs530059349	chr5:98915264-98915265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs548231412	chr5:98915324-98915325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs531193114	chr5:98915429-98915430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs566634615	chr5:98915482-98915483	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Merkel cell carcinoma	19020549	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Testicular cancer	18059402	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16573809	CNVD
Renal cell carcinoma	18194544	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
abnormal development	18461090	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	16774939	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Glioblastoma multiforme	22286061	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Ovarian cancer	21720365	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Salivary gland tumor	18059337	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98914400-98915200	Enhancers	HUVEC	blood vessel
2	chr5:98914600-98915200	Enhancers	Fetal Heart	heart
3	chr5:98915200-98916400	Weak transcription	HUVEC	blood vessel
4	chr5:98915200-98930800	Weak transcription	Fetal Heart	heart
5	chr5:98916400-98917800	Enhancers	HUVEC	blood vessel

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