Variant report

Variant	nsv981043
Chromosome Location	chr6:102888-122946
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr6:102964-103231	GM12878	blood:	n/a	n/a
2	BATF	chr6:110431-110632	GM12878	blood:	n/a	n/a
3	BATF	chr6:105896-106124	GM12878	blood:	n/a	n/a
4	BATF	chr6:104318-104716	GM12878	blood:	n/a	n/a
5	BATF	chr6:104763-105039	GM12878	blood:	n/a	n/a
6	BATF	chr6:104782-105065	GM12878	blood:	n/a	n/a
7	BATF	chr6:103020-103221	GM12878	blood:	n/a	n/a
8	BATF	chr6:103594-103813	GM12878	blood:	n/a	n/a
9	BCL11A	chr6:116423-116628	GM12878	blood:	n/a	n/a
10	BCL11A	chr6:120815-121190	GM12878	blood:	n/a	n/a
11	BCL11A	chr6:115208-115379	GM12878	blood:	n/a	n/a
12	BCL11A	chr6:108204-108602	GM12878	blood:	n/a	n/a
13	BCL11A	chr6:121201-121435	GM12878	blood:	n/a	n/a
14	BCL11A	chr6:114034-114568	GM12878	blood:	n/a	n/a
15	BCL11A	chr6:104721-105051	GM12878	blood:	n/a	n/a
16	BCL11A	chr6:108335-108715	GM12878	blood:	n/a	n/a
17	BCL11A	chr6:106509-106699	GM12878	blood:	n/a	n/a
18	BCL11A	chr6:102874-103445	GM12878	blood:	n/a	n/a
19	BCL11A	chr6:112119-112352	GM12878	blood:	n/a	n/a
20	BHLHE40	chr6:105996-106238	HepG2	liver:	n/a	n/a
21	CBX3	chr6:119747-120106	K562	blood:	n/a	n/a
22	CBX3	chr6:106134-106824	K562	blood:	n/a	n/a
23	CBX3	chr6:118694-119047	K562	blood:	n/a	n/a
24	CTCF	chr6:104700-105291	A549	lung:	n/a	chr6:104972-104981 chr6:104969-104987 chr6:104970-104986 chr6:104971-104992 chr6:104974-104984
25	CTCF	chr6:104810-105102	K562	blood:	n/a	chr6:104972-104981 chr6:104969-104987 chr6:104970-104986 chr6:104971-104992 chr6:104974-104984
26	CTCF	chr6:104720-105195	K562	blood:	n/a	chr6:104972-104981 chr6:104969-104987 chr6:104970-104986 chr6:104971-104992 chr6:104974-104984
27	CTCF	chr6:104744-105156	A549	lung:	n/a	chr6:104972-104981 chr6:104969-104987 chr6:104970-104986 chr6:104971-104992 chr6:104974-104984
28	CTCF	chr6:106050-106600	K562	blood:	n/a	n/a
29	CTCF	chr6:104950-105035	GM12878	blood:	n/a	chr6:104972-104981 chr6:104969-104987 chr6:104970-104986 chr6:104971-104992 chr6:104974-104984
30	CTCF	chr6:104683-105302	A549	lung:	n/a	chr6:104972-104981 chr6:104969-104987 chr6:104970-104986 chr6:104971-104992 chr6:104974-104984
31	CTCF	chr6:106117-106411	K562	blood:	n/a	n/a
32	CTCF	chr6:104860-105046	GM12878	blood:	n/a	chr6:104972-104981 chr6:104969-104987 chr6:104970-104986 chr6:104971-104992 chr6:104974-104984
33	CTCF	chr6:104777-105157	A549	lung:	n/a	chr6:104972-104981 chr6:104969-104987 chr6:104970-104986 chr6:104971-104992 chr6:104974-104984
34	CTCF	chr6:106111-106411	K562	blood:	n/a	n/a
35	CTCF	chr6:104865-105040	IMR90	lung:	n/a	chr6:104972-104981 chr6:104969-104987 chr6:104970-104986 chr6:104971-104992 chr6:104974-104984
36	EBF1	chr6:104781-105069	GM12878	blood:	n/a	n/a
37	EBF1	chr6:110718-110922	GM12878	blood:	n/a	n/a
38	EBF1	chr6:110654-111001	GM12878	blood:	n/a	n/a
39	EBF1	chr6:113966-114273	GM12878	blood:	n/a	n/a
40	EBF1	chr6:108326-108575	GM12878	blood:	n/a	n/a
41	EBF1	chr6:115305-115520	GM12878	blood:	n/a	n/a
42	EBF1	chr6:108213-108451	GM12878	blood:	n/a	n/a
43	EBF1	chr6:102919-103296	GM12878	blood:	n/a	n/a
44	EBF1	chr6:116450-116662	GM12878	blood:	n/a	n/a
45	EBF1	chr6:111623-112030	GM12878	blood:	n/a	n/a
46	EBF1	chr6:117264-117651	GM12878	blood:	n/a	n/a
47	EBF1	chr6:119339-119515	GM12878	blood:	n/a	n/a
48	EBF1	chr6:118690-118980	GM12878	blood:	n/a	n/a
49	EBF1	chr6:106547-106736	GM12878	blood:	n/a	n/a
50	EBF1	chr6:107664-107872	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
OR4F1P	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 51 )

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201724427	chr6:107042-107043	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs55774244	chr6:108666-108667	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs62392195	chr6:110004-110005	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs4087038	chr6:110222-110223	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs199942306	chr6:110240-110241	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs62392197	chr6:110371-110372	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs9405805	chr6:110916-110917	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs62392198	chr6:110990-110991	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs78042685	chr6:111602-111603	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:51)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Prader-willi syndrome	20588305	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Developmental delay	19490664	CNVD
Cancer	21183584	CNVD
Multiple Epiphyseal Dysplasia	20877625	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Glaucoma	18694899	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	17603634	CNVD
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Autism	22495311	CNVD
small cell lung cancer	20016488	CNVD
Cancer	20164919	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	22522925	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links