Variant report

Variant	nsv981064
Chromosome Location	chr6:65724494-65732187
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:76 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551878997	chr6:65730412-65730413	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs367585180	chr6:65730413-65730414	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs534606700	chr6:65730416-65730417	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs189923261	chr6:65730420-65730421	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs563998395	chr6:65730441-65730442	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs537215794	chr6:65730475-65730476	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs542484467	chr6:65730476-65730477	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs536199221	chr6:65730486-65730487	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs202049915	chr6:65730492-65730493	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs577047663	chr6:65730495-65730496	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs546124782	chr6:65730497-65730498	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs559390596	chr6:65730499-65730500	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs573150152	chr6:65730544-65730545	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs541834874	chr6:65730563-65730564	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs561817182	chr6:65730670-65730671	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs182539891	chr6:65730703-65730704	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs550743171	chr6:65730714-65730715	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs564745020	chr6:65730718-65730719	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs375194180	chr6:65730739-65730740	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs533456986	chr6:65730770-65730771	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs187202929	chr6:65730778-65730779	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs191962127	chr6:65730784-65730785	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs150736235	chr6:65730848-65730849	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs548231699	chr6:65730858-65730859	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs568141310	chr6:65730879-65730880	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs537177568	chr6:65730891-65730892	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs556874060	chr6:65730908-65730909	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs72877814	chr6:65730927-65730928	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs185151327	chr6:65730940-65730941	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs553196394	chr6:65730950-65730951	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs573075520	chr6:65730962-65730963	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs188825440	chr6:65731004-65731005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs561778170	chr6:65731047-65731048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs575322181	chr6:65731115-65731116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs544350150	chr6:65731147-65731148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs540734491	chr6:65731189-65731190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs564429121	chr6:65731240-65731241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs533530175	chr6:65731263-65731264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs565239847	chr6:65731274-65731275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs540488144	chr6:65731304-65731305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs368634711	chr6:65731309-65731310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs138048879	chr6:65731338-65731339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs529643634	chr6:65731339-65731340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs549586606	chr6:65731387-65731388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs568103219	chr6:65731416-65731417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs143394540	chr6:65731423-65731424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs550609651	chr6:65731430-65731431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs9342457	chr6:65731445-65731446	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs111879001	chr6:65731471-65731472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs193072893	chr6:65731487-65731488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Epilepsy	20502679	CNVD
Dyslexia	22102821	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:65730400-65731000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:65731000-65740200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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