Variant report

Variant	nsv981118
Chromosome Location	chr6:26885645-26891196
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:90 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534834220	chr6:26888206-26888207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs531988629	chr6:26888230-26888231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs550218585	chr6:26888265-26888266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs189266965	chr6:26888267-26888268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs367901657	chr6:26888279-26888280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs576066438	chr6:26888280-26888281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs563345101	chr6:26888281-26888282	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs571950179	chr6:26888282-26888283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs201429387	chr6:26888288-26888289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs368201172	chr6:26888290-26888291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs543338438	chr6:26888292-26888293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs559632553	chr6:26888300-26888301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs187242505	chr6:26888304-26888305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs551561760	chr6:26888306-26888307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs11970765	chr6:26888333-26888334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs375653395	chr6:26888348-26888349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs11963545	chr6:26888351-26888352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs200565608	chr6:26888355-26888356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs201116154	chr6:26888359-26888360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs113450954	chr6:26888363-26888364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs201060145	chr6:26888365-26888366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs202023039	chr6:26888366-26888367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs372556190	chr6:26888367-26888368	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs11960986	chr6:26888368-26888369	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs11960987	chr6:26888394-26888395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs11960988	chr6:26888396-26888397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs190299642	chr6:26888398-26888399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs12189666	chr6:26888420-26888421	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
29	rs199603516	chr6:26888434-26888435	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs549231568	chr6:26888436-26888437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs565986085	chr6:26888548-26888549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs534771682	chr6:26888658-26888659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs558027180	chr6:26888676-26888677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs147086595	chr6:26888727-26888728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs537176756	chr6:26888753-26888754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs151076348	chr6:26888754-26888755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs2754647	chr6:26888758-26888759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs373411907	chr6:26889000-26889001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs532688536	chr6:26889215-26889216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs185834906	chr6:26889220-26889221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs542276436	chr6:26889230-26889231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs190542480	chr6:26889349-26889350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs573210425	chr6:26889467-26889468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs545185589	chr6:26889549-26889550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs565184751	chr6:26889598-26889599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs140967207	chr6:26889639-26889640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs6928511	chr6:26889645-26889646	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
48	rs182381274	chr6:26889725-26889726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs545057387	chr6:26889727-26889728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs146994277	chr6:26889734-26889735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Williams-beuren syndrome	16971481	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	21569311	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21509527	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26888200-26893800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:26889400-26893600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:26889600-26891600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:26889600-26891800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:26889800-26894400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:26890200-26892800	Weak transcription	Adipose Nuclei	Adipose
7	chr6:26890200-26894400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:26890400-26893200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:26890600-26892800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:26890600-26893000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:26890600-26893000	Weak transcription	Fetal Kidney	kidney

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