Variant report

Variant	nsv981152
Chromosome Location	chr6:62063179-62070937
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 131 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:131 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs138802414	chr6:62063211-62063212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs3929849	chr6:62063215-62063216	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs551053185	chr6:62063234-62063235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs535281485	chr6:62063266-62063267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs56361341	chr6:62063307-62063308	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs562799308	chr6:62063326-62063327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs530475165	chr6:62063332-62063333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs549107080	chr6:62063333-62063334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs535550371	chr6:62063360-62063361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs557327469	chr6:62063373-62063374	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs575510803	chr6:62063394-62063395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs545786683	chr6:62063408-62063409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs142912884	chr6:62063415-62063416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs184437935	chr6:62063491-62063492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs540858932	chr6:62063515-62063516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs567418289	chr6:62063518-62063519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs372990040	chr6:62063529-62063530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs189363339	chr6:62063536-62063537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs182209219	chr6:62063548-62063549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs563304384	chr6:62063549-62063550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs147019187	chr6:62063553-62063554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs138075569	chr6:62063575-62063576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs377429494	chr6:62063658-62063659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs73757509	chr6:62063664-62063665	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs143868669	chr6:62063672-62063673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs547195184	chr6:62063681-62063682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs568514213	chr6:62063684-62063685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs535955105	chr6:62063699-62063700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs187230908	chr6:62063703-62063704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs12663923	chr6:62063713-62063714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs569010566	chr6:62063726-62063727	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs539478772	chr6:62063728-62063729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs148640166	chr6:62063734-62063735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs370991157	chr6:62063742-62063743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs571419575	chr6:62063756-62063757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs79087744	chr6:62063763-62063764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs141585462	chr6:62063772-62063773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs553133115	chr6:62063782-62063783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs201284645	chr6:62063798-62063799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs199791987	chr6:62063823-62063824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs67633007	chr6:62063825-62063826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs190374023	chr6:62063879-62063880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs563285175	chr6:62063892-62063893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs575388120	chr6:62063897-62063898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs545829940	chr6:62063898-62063899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs564043619	chr6:62063923-62063924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs74782851	chr6:62063927-62063928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs181614447	chr6:62063929-62063930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs185981778	chr6:62063938-62063939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs143780250	chr6:62063948-62063949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Lung cancer	19547694	CNVD
Myelofibrosis	22110671	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	23813976	CNVD
Tetralogy of Fallot	22912587	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:62059800-62065200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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