Variant report

Variant	nsv981313
Chromosome Location	chr6:86828455-86838191
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 435 )
Associated
traits (count: 104 )

Variant overlapped rSNPs/rCNVs (count:435 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567469772	chr6:86828460-86828461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs537955091	chr6:86828541-86828542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs372142095	chr6:86828644-86828645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs572196519	chr6:86828646-86828647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs185441213	chr6:86828654-86828655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs575411974	chr6:86828670-86828671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs539229364	chr6:86828675-86828676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs558061571	chr6:86828677-86828678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs573037057	chr6:86828683-86828684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs5877963	chr6:86828684-86828685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs540270521	chr6:86828705-86828706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs188393550	chr6:86828746-86828747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs573631853	chr6:86828793-86828794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs544331297	chr6:86828794-86828795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs562408022	chr6:86828795-86828796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs533593344	chr6:86828810-86828811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs545258038	chr6:86828825-86828826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs16876674	chr6:86828876-86828877	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs527978944	chr6:86828910-86828911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs529469069	chr6:86828912-86828913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs549434749	chr6:86828941-86828942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs1413725	chr6:86828987-86828988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs147700260	chr6:86829015-86829016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs567332965	chr6:86829016-86829017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs565997714	chr6:86829039-86829040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs181205220	chr6:86829041-86829042	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs550271027	chr6:86829090-86829091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs142454188	chr6:86829092-86829093	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs539652337	chr6:86829110-86829111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs1413726	chr6:86829126-86829127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs557657675	chr6:86829143-86829144	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs538069400	chr6:86829181-86829182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs570109514	chr6:86829194-86829195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs566819810	chr6:86829211-86829212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs146473716	chr6:86829243-86829244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs186630216	chr6:86829244-86829245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs28402721	chr6:86829252-86829253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs539195605	chr6:86829254-86829255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs139041543	chr6:86829270-86829271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs377026359	chr6:86829278-86829279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs543831934	chr6:86829279-86829280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs556249708	chr6:86829284-86829285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs149350303	chr6:86829295-86829296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs545632404	chr6:86829330-86829331	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs560526958	chr6:86829346-86829347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs13210234	chr6:86829362-86829363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs556206012	chr6:86829375-86829376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs191927918	chr6:86829433-86829434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs16879850	chr6:86829443-86829444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs561805728	chr6:86829450-86829451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:104)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
craniofacial dysmorphism	21918468	CNVD
Myelofibrosis	22110671	CNVD
Neurodevelopmental disorder	22521361	CNVD
abnormal development	18461090	CNVD
Myelodysplastic syndrome	18508791	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86826600-86839600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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