Variant report

Variant	nsv981328
Chromosome Location	chr6:63349116-63365618
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:17229945..17231648-chr6:63349079..63350580,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272426	chromatin interactions

Extended variants
information (count: 629 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:629 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs577805988	chr6:63349117-63349118	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs188429888	chr6:63349147-63349148	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs375979118	chr6:63349149-63349150	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs2782380	chr6:63349180-63349181	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs371700704	chr6:63349230-63349231	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs374894297	chr6:63349231-63349232	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs369939194	chr6:63349234-63349235	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs143990174	chr6:63349249-63349250	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs148636028	chr6:63349268-63349269	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs540593187	chr6:63349402-63349403	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs193025552	chr6:63349448-63349449	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs73500902	chr6:63349459-63349460	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs375255564	chr6:63349466-63349467	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs570753016	chr6:63349491-63349492	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs532644832	chr6:63349493-63349494	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs569336716	chr6:63349542-63349543	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs553173366	chr6:63349636-63349637	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs147337100	chr6:63349682-63349683	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs566181817	chr6:63349699-63349700	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs533648528	chr6:63349705-63349706	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs548558301	chr6:63349733-63349734	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs141030366	chr6:63349747-63349748	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs539487935	chr6:63349748-63349749	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs537736597	chr6:63349749-63349750	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs183003206	chr6:63349761-63349762	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs56957788	chr6:63349783-63349784	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs75602998	chr6:63349792-63349793	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs72879772	chr6:63349802-63349803	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs369407536	chr6:63349845-63349846	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs538781578	chr6:63349860-63349861	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs554019974	chr6:63349865-63349866	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs2782381	chr6:63349898-63349899	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs540777427	chr6:63349900-63349901	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs562041620	chr6:63349901-63349902	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs144877791	chr6:63349930-63349931	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs2843034	chr6:63349954-63349955	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs2782382	chr6:63349964-63349965	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs533459170	chr6:63349970-63349971	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs551908184	chr6:63349991-63349992	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs560353355	chr6:63350034-63350035	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs2843033	chr6:63350053-63350054	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs187330576	chr6:63350059-63350060	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs116275046	chr6:63350089-63350090	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs191759216	chr6:63350100-63350101	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs2782383	chr6:63350106-63350107	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs552928709	chr6:63350135-63350136	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs538597137	chr6:63350189-63350190	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs554007731	chr6:63350198-63350199	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs183928256	chr6:63350307-63350308	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs534272229	chr6:63350318-63350319	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Schizophrenia	23813976	CNVD
small cell lung cancer	20016488	CNVD
Cancer	20164920	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63348000-63356800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:63357000-63357200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:63359000-63363600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:63361400-63363600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr6:63361600-63363200	ZNF genes & repeats	Liver	Liver
6	chr6:63361600-63363800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:63362000-63364200	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr6:63363000-63363600	Active TSS	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links