Variant report

Variant	nsv981362
Chromosome Location	chr6:63663457-63685846
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 165 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:165 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551303884	chr6:63681520-63681521	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs569560865	chr6:63681530-63681531	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs138060720	chr6:63681540-63681541	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs558044687	chr6:63681556-63681557	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs143529739	chr6:63681583-63681584	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs533665550	chr6:63681585-63681586	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs538882043	chr6:63681616-63681617	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs573558273	chr6:63681621-63681622	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs192207960	chr6:63681667-63681668	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs145828227	chr6:63681681-63681682	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs184712525	chr6:63681701-63681702	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs138281137	chr6:63681822-63681823	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs370482338	chr6:63681836-63681837	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560106691	chr6:63681843-63681844	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs114695979	chr6:63681890-63681891	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs572743812	chr6:63681902-63681903	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs149608011	chr6:63681928-63681929	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs535009360	chr6:63681951-63681952	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs73496834	chr6:63681956-63681957	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs569597785	chr6:63681957-63681958	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs369443888	chr6:63681980-63681981	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs555203519	chr6:63682056-63682057	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs9447716	chr6:63682089-63682090	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs566973829	chr6:63682109-63682110	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs534355767	chr6:63682151-63682152	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs555213069	chr6:63682154-63682155	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs534496407	chr6:63682260-63682261	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs543809006	chr6:63682274-63682275	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs563797741	chr6:63682300-63682301	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs187564330	chr6:63682304-63682305	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs546518987	chr6:63682319-63682320	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs144407607	chr6:63682377-63682378	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs7738181	chr6:63682426-63682427	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs148793557	chr6:63682430-63682431	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs572158602	chr6:63682433-63682434	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs192451427	chr6:63682479-63682480	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs143582146	chr6:63682481-63682482	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs562085510	chr6:63682485-63682486	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs184500944	chr6:63682507-63682508	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs538699273	chr6:63682542-63682543	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs544648977	chr6:63682634-63682635	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs141991001	chr6:63682663-63682664	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs189899615	chr6:63682670-63682671	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs528595068	chr6:63682673-63682674	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs373893488	chr6:63682706-63682707	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs567112769	chr6:63682739-63682740	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs367860440	chr6:63682746-63682747	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs577399272	chr6:63682768-63682769	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs551334424	chr6:63682769-63682770	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs557282917	chr6:63682905-63682906	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Lung cancer	18438408	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Cancer	20164920	CNVD
Prostate cancer	16573809	CNVD
Ovarian cancer	19835627	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:63681400-63681600	Enhancers	Fetal Intestine Small	intestine
2	chr6:63681400-63683000	Enhancers	Fetal Intestine Large	intestine
3	chr6:63681600-63682600	Weak transcription	Fetal Intestine Small	intestine
4	chr6:63682600-63683200	Enhancers	Fetal Intestine Small	intestine
5	chr6:63682600-63683400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:63683200-63683400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:63683400-63690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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