Variant report

Variant	nsv981363
Chromosome Location	chr6:77644709-77686112
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-15	chr6:77661074-77663494	NONHSAT113651
2	lnc-MYO6-15	chr6:77665983-77666282	NONHSAT113650
3	lnc-MYO6-15	chr6:77682889-77683422	NONHSAT113650
4	lnc-MYO6-15	chr6:77666315-77666328	NONHSAT113650
5	lnc-MYO6-15	chr6:77663786-77664113	FPKM1_group_27832_transcript_1
6	lnc-MYO6-15	chr6:77663786-77667065	NONHSAT113651
7	lnc-MYO6-15	chr6:77661074-77663494	FPKM1_group_27832_transcript_1
8	lnc-MYO6-15	chr6:77658958-77659487	NONHSAT113650

No data

Extended variants
information (count: 361 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:361 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12199411	chr6:77658962-77658963	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs182262985	chr6:77658994-77658995	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs9443332	chr6:77659000-77659001	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs147965111	chr6:77659086-77659087	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs140126718	chr6:77659142-77659143	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs551428540	chr6:77659145-77659146	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs186509388	chr6:77659179-77659180	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs191701634	chr6:77659239-77659240	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs184964473	chr6:77659298-77659299	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs568762486	chr6:77659299-77659300	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs375781529	chr6:77659305-77659306	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs188231022	chr6:77659307-77659308	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs571866400	chr6:77659436-77659437	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs1224201	chr6:77659444-77659445	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs373436524	chr6:77659452-77659453	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs539887792	chr6:77659474-77659475	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs77938583	chr6:77661078-77661079	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs185740548	chr6:77661237-77661238	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs138776922	chr6:77661264-77661265	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs190936510	chr6:77661277-77661278	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs183084199	chr6:77661291-77661292	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs551592588	chr6:77661334-77661335	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs372165540	chr6:77661386-77661387	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs563504467	chr6:77661390-77661391	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs323223	chr6:77661403-77661404	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs571822801	chr6:77661474-77661475	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs7769353	chr6:77661477-77661478	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs187755427	chr6:77661482-77661483	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs323224	chr6:77661511-77661512	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs546658893	chr6:77661567-77661568	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs571604173	chr6:77661580-77661581	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs538903411	chr6:77661593-77661594	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs190943481	chr6:77661645-77661646	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs1570260	chr6:77661646-77661647	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs570785419	chr6:77661662-77661663	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs535974221	chr6:77661711-77661712	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs554689399	chr6:77661735-77661736	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs372452314	chr6:77661754-77661755	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs535975183	chr6:77661782-77661783	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs182770510	chr6:77661796-77661797	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs28451824	chr6:77661812-77661813	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs188096845	chr6:77661866-77661867	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs192859019	chr6:77661876-77661877	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs545265270	chr6:77661877-77661878	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs563540052	chr6:77661913-77661914	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs531053541	chr6:77661917-77661918	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs184589833	chr6:77661935-77661936	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs552628413	chr6:77661958-77661959	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs376092187	chr6:77661999-77662000	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs546989683	chr6:77662030-77662031	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77664600-77665000	Enhancers	Fetal Brain Male	brain
2	chr6:77664600-77665400	Enhancers	Brain Germinal Matrix	brain
3	chr6:77668400-77668600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:77668600-77669200	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr6:77669000-77669200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:77675400-77676000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:77681800-77682400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:77682000-77682400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:77682000-77682800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:77682000-77683000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:77682200-77682800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:77682400-77682800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:77682600-77683000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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