Variant report

Variant	nsv981406
Chromosome Location	chr7:108590792-108593232
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:108590037..108592950-chr7:108595377..108597587,3	K562	blood:
2	chr7:108591189..108592950-chr7:108595377..108596962,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DNAJB9-2	chr7:108592469-108592723	XLOC_006206

Extended variants
information (count: 25 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs555356837	chr7:108590805-108590806	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs139607872	chr7:108590848-108590849	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs145121693	chr7:108590862-108590863	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs116624935	chr7:108590872-108590873	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs577379647	chr7:108590947-108590948	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs540043107	chr7:108590993-108590994	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs553166765	chr7:108591011-108591012	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs573305599	chr7:108591065-108591066	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs79631432	chr7:108591074-108591075	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs562088862	chr7:108591083-108591084	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs182654761	chr7:108591117-108591118	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs188080200	chr7:108591131-108591132	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs116905162	chr7:108592509-108592510	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs184861975	chr7:108592510-108592511	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs555783924	chr7:108592534-108592535	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs115090976	chr7:108592548-108592549	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs538207726	chr7:108592575-108592576	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs374161761	chr7:108592578-108592579	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs558168079	chr7:108592599-108592600	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs578104975	chr7:108592600-108592601	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs540912677	chr7:108592634-108592635	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs848316	chr7:108592654-108592655	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs528564308	chr7:108592701-108592702	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs546643752	chr7:108592702-108592703	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs370022396	chr7:108592722-108592723	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Melanoma	17363583	CNVD
Myelofibrosis	22110671	CNVD
Squamous cell cancer	20885788	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	16397240	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Autism	19401682	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
small cell lung cancer	20016488	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108590800-108591200	Enhancers	Brain Germinal Matrix	brain

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