Variant report

Variant	nsv981434
Chromosome Location	chr7:14105236-14110821
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DGKB-2	chr7:14110160-14111005	NONHSAT119264

Extended variants
information (count: 271 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:271 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113080331	chr7:14105247-14105248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs60907890	chr7:14105249-14105250	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs398066642	chr7:14105254-14105255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs367690202	chr7:14105297-14105298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs374243401	chr7:14105298-14105299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs398039011	chr7:14105308-14105309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs34553065	chr7:14105317-14105318	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs6461064	chr7:14105327-14105328	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs145527905	chr7:14105362-14105363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs181945422	chr7:14105366-14105367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs556087706	chr7:14105372-14105373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs534665667	chr7:14105377-14105378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs148856231	chr7:14105413-14105414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs535128440	chr7:14105440-14105441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs555087835	chr7:14105469-14105470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs574682775	chr7:14105487-14105488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs369713406	chr7:14105521-14105522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs143533337	chr7:14105523-14105524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs554146819	chr7:14105532-14105533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs577438101	chr7:14105636-14105637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs373238895	chr7:14105657-14105658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs148036966	chr7:14105676-14105677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs531786825	chr7:14105697-14105698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs542336032	chr7:14105708-14105709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs554958402	chr7:14105738-14105739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs375948695	chr7:14105844-14105845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs562201488	chr7:14105847-14105848	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs557341976	chr7:14105867-14105868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs143726851	chr7:14105869-14105870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs6461065	chr7:14105880-14105881	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs570566906	chr7:14105910-14105911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs533210177	chr7:14105912-14105913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs373288204	chr7:14105949-14105950	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs186115500	chr7:14105961-14105962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs569305373	chr7:14105965-14105966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs62452805	chr7:14105996-14105997	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs189068477	chr7:14106042-14106043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs150189724	chr7:14106119-14106120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs571853001	chr7:14106158-14106159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs79896200	chr7:14106159-14106160	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs577648899	chr7:14106181-14106182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs77961910	chr7:14106202-14106203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs181644497	chr7:14106203-14106204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs554302924	chr7:14106220-14106221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs186751717	chr7:14106223-14106224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs540124306	chr7:14106237-14106238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs17167826	chr7:14106242-14106243	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs191145776	chr7:14106245-14106246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs577008992	chr7:14106255-14106256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs576492148	chr7:14106288-14106289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Myelofibrosis	22110671	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Pancreatic cancer	17952125	CNVD
Glioblastoma multiforme	18628472	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14102800-14106600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr7:14106400-14110000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:14109600-14111000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:14110000-14111200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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