Variant report

Variant	nsv981493
Chromosome Location	chr7:63347520-63351494
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr7:63349447-63349536	H1-hESC	embryonic stem cell:	n/a	n/a
2	SMC3	chr7:63351450-63351546	Hela-S3	cervix:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF680-4	chr7:63351452-63351598	ENSG00000236299.3
2	lnc-ZNF680-4	chr7:63348694-63348817	ENSG00000236299.3
3	lnc-ZNF680-4	chr7:63348578-63348817	ENSG00000236299
4	lnc-ZNF680-4	chr7:63348603-63348817	ENSG00000236299.3
5	lnc-ZNF680-4	chr7:63348578-63348817	ENSG00000236299.3
6	lnc-ZNF680-4	chr7:63351452-63351598	ENSG00000236299.3
7	lnc-ZNF680-4	chr7:63348603-63348817	ENSG00000236299.3
8	lnc-ZNF680-4	chr7:63348603-63348817	ENSG00000236299.3

No data

Variant related genes	Relation type
ENSG00000235720	TF binding region

Extended variants
information (count: 162 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:162 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs60034138	chr7:63347572-63347573	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs535517492	chr7:63347581-63347582	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs188839443	chr7:63347582-63347583	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs139366952	chr7:63347619-63347620	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs114168779	chr7:63347620-63347621	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs558043541	chr7:63347664-63347665	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs578001082	chr7:63347689-63347690	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs60897208	chr7:63347718-63347719	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs570272741	chr7:63347745-63347746	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs528587404	chr7:63347746-63347747	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs58775011	chr7:63347749-63347750	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs111455737	chr7:63347824-63347825	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs561785963	chr7:63347847-63347848	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs150051553	chr7:63347848-63347849	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs528446801	chr7:63347867-63347868	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs550889944	chr7:63347887-63347888	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs377515334	chr7:63347931-63347932	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs374001784	chr7:63348581-63348582	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs537322091	chr7:63348600-63348601	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
20	rs577541771	chr7:63348613-63348614	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
21	rs386713863	chr7:63348626-63348627	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
22	rs180763797	chr7:63348627-63348628	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
23	rs10275509	chr7:63348656-63348657	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs565593010	chr7:63348668-63348669	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
25	rs150400283	chr7:63348669-63348670	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
26	rs112318540	chr7:63348774-63348775	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
27	rs10235050	chr7:63348783-63348784	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs545140422	chr7:63348833-63348834	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs564922434	chr7:63348850-63348851	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs34147435	chr7:63348857-63348858	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs111800966	chr7:63348862-63348863	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs550832805	chr7:63348870-63348871	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs568111400	chr7:63348910-63348911	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs368890737	chr7:63348925-63348926	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs372224945	chr7:63348933-63348934	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs561435884	chr7:63348946-63348947	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs530271564	chr7:63348948-63348949	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs375947319	chr7:63348980-63348981	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs10245626	chr7:63348984-63348985	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs567100537	chr7:63349010-63349011	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs7802897	chr7:63349016-63349017	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs7802902	chr7:63349034-63349035	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs10232230	chr7:63349057-63349058	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs537061269	chr7:63349067-63349068	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs557330631	chr7:63349078-63349079	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs374192344	chr7:63349133-63349134	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs149528348	chr7:63349190-63349191	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs567452123	chr7:63349202-63349203	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs78251990	chr7:63349206-63349207	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs10238457	chr7:63349214-63349215	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
Salivary gland tumor	18059337	CNVD
Multiple myeloma	17550852	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Bipolar disorder	19114987	CNVD
Schizophrenia	23813976	CNVD
Schizophrenia	20967226	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63346000-63348000	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr7:63346400-63347800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr7:63347000-63347600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr7:63348600-63352200	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr7:63351200-63351600	ZNF genes & repeats	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links