Variant report

Variant	nsv981637
Chromosome Location	chr7:57238947-57239592
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs563655440	chr7:57238971-57238972	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs530956863	chr7:57238977-57238978	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs549434987	chr7:57238987-57238988	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs191123977	chr7:57239016-57239017	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs143235625	chr7:57239017-57239018	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs563152920	chr7:57239047-57239048	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs373608835	chr7:57239052-57239053	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs10227747	chr7:57239071-57239072	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs183910524	chr7:57239074-57239075	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs571862519	chr7:57239110-57239111	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs539278275	chr7:57239145-57239146	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs550308019	chr7:57239184-57239185	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs568830316	chr7:57239185-57239186	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs187710677	chr7:57239198-57239199	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs554686531	chr7:57239199-57239200	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs573098956	chr7:57239203-57239204	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs114506271	chr7:57239204-57239205	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs558680387	chr7:57239248-57239249	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs577068244	chr7:57239250-57239251	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs371332420	chr7:57239256-57239257	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs76408524	chr7:57239292-57239293	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs374681707	chr7:57239306-57239307	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs148309251	chr7:57239309-57239310	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs371583013	chr7:57239331-57239332	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs190940156	chr7:57239332-57239333	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs546253274	chr7:57239348-57239349	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs62464840	chr7:57239357-57239358	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs183214046	chr7:57239362-57239363	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs565429678	chr7:57239374-57239375	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs186961915	chr7:57239392-57239393	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs551245594	chr7:57239420-57239421	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs568792074	chr7:57239422-57239423	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs535588423	chr7:57239478-57239479	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs368074552	chr7:57239508-57239509	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs536230007	chr7:57239511-57239512	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs548177301	chr7:57239572-57239573	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs566584804	chr7:57239573-57239574	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Wilms tumour	21544195	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Esophageal cancer	21851588	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Intracranial ependymoma	16609018	CNVD
Lung cancer	21911935	CNVD
Urothelial cell carcinoma	18451213	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	19455253	CNVD
Lung cancer	17925434	CNVD
Glioma	24330732	CNVD
Lung adenocarcinoma	23938291	CNVD
Glioma	17634744	CNVD
Oral squamous cell carcinoma	19276369	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Lung cancer	20031968	CNVD
Glioblastoma	17090523	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Glioma	17123091	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Medullary thyroid carcinoma	18765511	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Williams Syndrome	20824207	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:57228800-57239000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:57237800-57239800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:57239200-57239600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links