Variant report

Variant	nsv981660
Chromosome Location	chr7:66756319-66761966
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SBDS-17	chr7:66760605-66760788	NR_022007
2	lnc-SBDS-17	chr7:66760605-66760788	NONHSAT121270
3	lnc-SBDS-17	chr7:66760605-66760788	NR_046299
4	lnc-SBDS-17	chr7:66757423-66757536	NR_022007
5	lnc-SBDS-17	chr7:66757447-66757536	NONHSAT121270
6	lnc-SBDS-17	chr7:66757450-66757536	NR_046299
7	lnc-SBDS-17	chr7:66760605-66760788	NR_046297
8	lnc-SBDS-17	chr7:66757450-66757536	NR_046297

No data

Extended variants
information (count: 187 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:187 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs565720046	chr7:66756325-66756326	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs530290807	chr7:66756342-66756343	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs540945079	chr7:66756381-66756382	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs192477705	chr7:66756382-66756383	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs560743731	chr7:66756387-66756388	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs532189934	chr7:66756390-66756391	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs369370343	chr7:66756402-66756403	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs555107575	chr7:66756449-66756450	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs9638502	chr7:66756464-66756465	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs543686838	chr7:66756476-66756477	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs557264928	chr7:66756487-66756488	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs184798874	chr7:66756550-66756551	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs377675815	chr7:66756558-66756559	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs568177200	chr7:66756693-66756694	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs369544687	chr7:66756705-66756706	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs547317676	chr7:66756716-66756717	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs374360100	chr7:66756725-66756726	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570411520	chr7:66756745-66756746	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs545746124	chr7:66756749-66756750	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs538688475	chr7:66756793-66756794	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs558690432	chr7:66756835-66756836	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs201015555	chr7:66756848-66756849	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs537979552	chr7:66756871-66756872	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs555015024	chr7:66756942-66756943	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs575123060	chr7:66756960-66756961	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs540824639	chr7:66756978-66756979	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs59788199	chr7:66757016-66757017	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs577619491	chr7:66757025-66757026	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs115819045	chr7:66757164-66757165	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
30	rs562366982	chr7:66757217-66757218	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs541981211	chr7:66757247-66757248	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs145825057	chr7:66757285-66757286	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs374181452	chr7:66757325-66757326	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs113702303	chr7:66757419-66757420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs17350138	chr7:66757469-66757470	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs80142533	chr7:66757474-66757475	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs376568436	chr7:66757507-66757508	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs78535824	chr7:66757534-66757535	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs561425173	chr7:66757576-66757577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs561117467	chr7:66757582-66757583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs13924	chr7:66757588-66757589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs527531348	chr7:66757653-66757654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs547179947	chr7:66757698-66757699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs200299818	chr7:66757768-66757769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs201042239	chr7:66757820-66757821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs113121796	chr7:66757864-66757865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs539354302	chr7:66757868-66757869	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs186605689	chr7:66757872-66757873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs149171991	chr7:66757882-66757883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs538225019	chr7:66757905-66757906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
Salivary gland tumor	18059337	CNVD
Multiple myeloma	17550852	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Bladder cancer	21909424	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164920	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Lung cancer	21911935	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Neurodevelopmental disorder	22521361	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	20668451	CNVD
Prostate cancer	20601956	CNVD
Nasopharyngeal cancer	22815911	CNVD
Prostate cancer	21248069	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Prostate cancer	17297502	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66694800-66766600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr7:66701600-66766600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr7:66717400-66766200	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:66717400-66766400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:66717800-66766400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:66719000-66766400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:66719800-66766200	Weak transcription	Spleen	Spleen
8	chr7:66723800-66766400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:66725800-66766200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:66725800-66766400	Weak transcription	Adipose Nuclei	Adipose
11	chr7:66727600-66766200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr7:66728600-66766600	Weak transcription	Brain Angular Gyrus	brain
13	chr7:66729000-66767000	Weak transcription	Gastric	stomach
14	chr7:66733200-66766600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:66733400-66766800	Weak transcription	Lung	lung
16	chr7:66736400-66766600	Weak transcription	Brain Substantia Nigra	brain
17	chr7:66742200-66766400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr7:66742400-66766400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr7:66742600-66766800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:66747600-66766600	Weak transcription	Brain Hippocampus Middle	brain
21	chr7:66748200-66766800	Weak transcription	Ovary	ovary
22	chr7:66748400-66766400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:66749000-66764800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:66749600-66766400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr7:66749600-66766400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr7:66749600-66766600	Weak transcription	Brain Anterior Caudate	brain
27	chr7:66749600-66766600	Weak transcription	Fetal Intestine Large	intestine
28	chr7:66750200-66756400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr7:66750400-66765600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:66751000-66758800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:66751000-66766600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr7:66751000-66767000	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr7:66751200-66766400	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr7:66751800-66766200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr7:66752600-66758200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr7:66753600-66766200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr7:66754000-66766600	Weak transcription	Left Ventricle	heart
38	chr7:66754600-66766600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr7:66754800-66766400	Weak transcription	Thymus	Thymus
40	chr7:66755000-66764800	Weak transcription	Dnd41	blood
41	chr7:66755400-66766400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr7:66755800-66766200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr7:66756000-66756600	Strong transcription	Fetal Intestine Small	intestine
44	chr7:66756000-66756600	Strong transcription	Fetal Stomach	stomach
45	chr7:66756000-66757000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr7:66756000-66766400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr7:66756000-66766400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr7:66756200-66757400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr7:66756400-66757400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr7:66756600-66766600	Weak transcription	Fetal Intestine Small	intestine

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