Variant report

Variant	nsv981840
Chromosome Location	chr7:110214902-110237210
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:110217485..110220983-chr7:110221903..110224084,4	K562	blood:
2	chr7:110213527..110215696-chr7:110217395..110219869,2	K562	blood:
3	chr7:110233254..110235232-chr7:110235451..110237556,2	K562	blood:
4	chr7:110210356..110211878-chr7:110217551..110219256,2	K562	blood:
5	chr7:110213527..110215696-chr7:110217395..110219869,2	K562	blood:
6	chr7:110202555..110205359-chr7:110210937..110215614,4	K562	blood:
7	chr7:110022490..110023034-chr7:110215311..110216187,2	MCF-7	breast:
8	chr7:110204286..110206261-chr7:110213162..110216015,2	MCF-7	breast:
9	chr7:110230991..110233321-chr7:110235891..110237752,2	K562	blood:
10	chr7:110217485..110220983-chr7:110221903..110224084,4	K562	blood:
11	chr7:110213023..110215419-chr9:128411518..128413018,2	MCF-7	breast:
12	chr7:110230991..110233321-chr7:110235891..110237752,2	K562	blood:
13	chr7:110233254..110235232-chr7:110235451..110237556,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRRN3-1	chr7:110231030-110232218	XLOC_006207

No data

Variant related genes	Relation type
ENSG00000119487	chromatin interactions
TNRC6A	miRNA target sites

Extended variants
information (count: 467 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:467 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs377294651	chr7:110214917-110214918	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs12536009	chr7:110214921-110214922	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs533651051	chr7:110214979-110214980	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs553686191	chr7:110214999-110215000	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs573574015	chr7:110215012-110215013	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs191298113	chr7:110215019-110215020	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs555620873	chr7:110215034-110215035	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs376155722	chr7:110215053-110215054	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs146052084	chr7:110215057-110215058	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs537646146	chr7:110215065-110215066	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs151155923	chr7:110215084-110215085	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs544392381	chr7:110215085-110215086	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs564388501	chr7:110215219-110215220	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs140093302	chr7:110215239-110215240	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs141459518	chr7:110215258-110215259	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs369994283	chr7:110215284-110215285	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs529250662	chr7:110215339-110215340	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs554889523	chr7:110215364-110215365	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs575834475	chr7:110215443-110215444	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs74646047	chr7:110215491-110215492	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs184585719	chr7:110215557-110215558	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs571360274	chr7:110215558-110215559	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs76607873	chr7:110215564-110215565	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs547198908	chr7:110215572-110215573	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs567385440	chr7:110215576-110215577	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs189910094	chr7:110215615-110215616	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs555782980	chr7:110215618-110215619	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs575531362	chr7:110215627-110215628	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs538070555	chr7:110215687-110215688	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs540473340	chr7:110215692-110215693	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs139566218	chr7:110215696-110215697	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs558290524	chr7:110215705-110215706	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs578122091	chr7:110215706-110215707	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs149706102	chr7:110215724-110215725	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs192852955	chr7:110215725-110215726	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs147852707	chr7:110215739-110215740	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs574118980	chr7:110215740-110215741	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs543037780	chr7:110215772-110215773	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs562872085	chr7:110215818-110215819	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs556068841	chr7:110215830-110215831	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs550356602	chr7:110215866-110215867	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs139729975	chr7:110215909-110215910	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs546104674	chr7:110215954-110215955	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs17395309	chr7:110215961-110215962	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs116300663	chr7:110215962-110215963	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs547605624	chr7:110215968-110215969	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs117987633	chr7:110216038-110216039	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs535989609	chr7:110216085-110216086	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs549320506	chr7:110216141-110216142	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs569319957	chr7:110216155-110216156	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Melanoma	17363583	CNVD
Myelofibrosis	22110671	CNVD
Squamous cell cancer	20885788	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	16397240	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Autism	19401682	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
small cell lung cancer	20016488	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
T-cell lymphomas	22341440	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:110214600-110215000	Enhancers	A549	lung
2	chr7:110214600-110217800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:110214600-110217800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:110214800-110215200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:110215000-110215400	Weak transcription	A549	lung
6	chr7:110215200-110217800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr7:110215400-110215800	Enhancers	A549	lung
8	chr7:110216000-110216200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr7:110217800-110218000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
10	chr7:110217800-110218400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr7:110217800-110218400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:110218000-110218400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
13	chr7:110218400-110219600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr7:110227600-110228200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr7:110228600-110229000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr7:110229800-110230600	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr7:110230200-110230600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr7:110230400-110231200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr7:110230600-110231400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr7:110230800-110232600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:110231200-110240600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:110231400-110231800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:110231400-110232800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr7:110232400-110232800	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr7:110232600-110233400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:110232800-110233200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr7:110233200-110233400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr7:110233200-110233800	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr7:110233400-110233800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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