Variant report

Variant	nsv981845
Chromosome Location	chr7:15458520-15462026
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 150 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:150 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs183966018	chr7:15458539-15458540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs185924654	chr7:15458541-15458542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs142189837	chr7:15458590-15458591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs564281235	chr7:15458608-15458609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs528293001	chr7:15458646-15458647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs151189363	chr7:15458654-15458655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs28526445	chr7:15458709-15458710	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs535451835	chr7:15458720-15458721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs550599677	chr7:15458728-15458729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs78400720	chr7:15458765-15458766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs190794896	chr7:15458784-15458785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs370055763	chr7:15458790-15458791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs557990707	chr7:15458810-15458811	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs573350563	chr7:15458811-15458812	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs115786182	chr7:15458824-15458825	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs556094013	chr7:15458830-15458831	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs572641227	chr7:15458838-15458839	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs574426528	chr7:15458847-15458848	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs28385878	chr7:15458857-15458858	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs374594907	chr7:15458876-15458877	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs140409911	chr7:15458943-15458944	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs370491903	chr7:15458976-15458977	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs563303083	chr7:15458997-15458998	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs543023819	chr7:15458998-15458999	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs564279760	chr7:15459016-15459017	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs575335976	chr7:15459021-15459022	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs533377220	chr7:15459034-15459035	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs182520522	chr7:15459051-15459052	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs12699711	chr7:15459080-15459081	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs528240698	chr7:15459108-15459109	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs546522182	chr7:15459138-15459139	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs529439936	chr7:15459140-15459141	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs28666544	chr7:15459152-15459153	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs529185181	chr7:15459170-15459171	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs28459767	chr7:15459247-15459248	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs112363618	chr7:15459260-15459261	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs568882968	chr7:15459292-15459293	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs539464125	chr7:15459298-15459299	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs34482531	chr7:15459300-15459301	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs558769694	chr7:15459305-15459306	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs397889734	chr7:15459309-15459310	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs566899396	chr7:15459310-15459311	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs10232120	chr7:15459319-15459320	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs556030808	chr7:15459349-15459350	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs574368616	chr7:15459370-15459371	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs59394225	chr7:15459393-15459394	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs118005872	chr7:15459432-15459433	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs150366945	chr7:15459439-15459440	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs577110141	chr7:15459473-15459474	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs10264776	chr7:15459495-15459496	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Autism	22495311	CNVD
Prostate cancer	16573809	CNVD
Acute myeloid leukemia	21251322	CNVD
Melanoma	17363583	CNVD
Kartagener syndrome	16639409	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	19242612	CNVD
Autism	18414403	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21858162	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Heart disease	21282601	CNVD
Rubinstein-Taybi syndrome	22470819	CNVD
Alzheimer''s disease	22166940	CNVD
Abnormal phenotypes	18644119	CNVD
Non-syndromic sensorineural hearing loss	22570644	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	22522925	CNVD
Bladder cancer	21909424	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15455200-15469800	Weak transcription	Aorta	Aorta
2	chr7:15457600-15461200	Weak transcription	Liver	Liver
3	chr7:15458800-15459400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:15458800-15460400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:15459400-15459600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:15459600-15459800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:15459800-15460000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:15460400-15464000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:15461200-15462600	Strong transcription	Liver	Liver

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